Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 seq7 86.0 7e-12 >seq4 Length=12041450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 2382280 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 2382223 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 6395215 ATAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 6395272 >seq7 Length=809302 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472 ||| ||||| || ||||| ||||| |||||| |||| | ||||||||| | | ||| Sbjct 287826 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 287767 Query 109473 GGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531 | | |||| ||| | || | |||| |||||| || || || |||||| | Sbjct 287766 AGCATAATTCGG-CTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTC 287708 Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591 | | || || |||||||| |||| || |||||| ||||||||| || |||||||||| Sbjct 287707 CCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACA 287648 Query 109592 A 109592 | Sbjct 287647 A 287647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472 ||| ||||| || ||||| ||||| |||||| |||| | ||||||||| | | ||| Sbjct 315590 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 315531 Query 109473 GGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531 | | |||| ||| | || | |||| |||||| || || || |||||| | Sbjct 315530 AGCATAATTCGG-CTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTC 315472 Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591 | | || || |||||||| |||| || |||||| ||||||||| || |||||||||| Sbjct 315471 CCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACA 315412 Query 109592 A 109592 | Sbjct 315411 A 315411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588925473221400