Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq4 87.8 2e-12
seq7 86.0 7e-12
>seq4
Length=12041450
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773
|||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 2382280 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 2382223
Score = 82.4 bits (90), Expect = 9e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773
|||||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 6395215 ATAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 6395272
>seq7
Length=809302
Score = 86.0 bits (94), Expect = 7e-12
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472
||| ||||| || ||||| ||||| |||||| |||| | ||||||||| | | |||
Sbjct 287826 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 287767
Query 109473 GGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531
| | |||| ||| | || | |||| |||||| || || || |||||| |
Sbjct 287766 AGCATAATTCGG-CTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTC 287708
Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591
| | || || |||||||| |||| || |||||| ||||||||| || ||||||||||
Sbjct 287707 CCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACA 287648
Query 109592 A 109592
|
Sbjct 287647 A 287647
Score = 86.0 bits (94), Expect = 7e-12
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472
||| ||||| || ||||| ||||| |||||| |||| | ||||||||| | | |||
Sbjct 315590 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 315531
Query 109473 GGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531
| | |||| ||| | || | |||| |||||| || || || |||||| |
Sbjct 315530 AGCATAATTCGG-CTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTC 315472
Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591
| | || || |||||||| |||| || |||||| ||||||||| || ||||||||||
Sbjct 315471 CCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACA 315412
Query 109592 A 109592
|
Sbjct 315411 A 315411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588925473221400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |