Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 129 7e-25 >seq7 Length=809302 Score = 129 bits (142), Expect = 7e-25 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545 || ||||||||| | ||| | || ||||||||| | |||||||||||||| || || Sbjct 314981 TTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 314922 Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605 ||| || || || | ||| || | || ||||| | |||| || | || ||||| Sbjct 314921 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAACT 314862 Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665 ||| || ||| |||||| || |||||||| ||||| | || | || ||||| Sbjct 314861 GCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTC 314802 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 | |||||||| ||||| || | ||| ||||||||||| |||||||| Sbjct 314801 TTCGGATTCAAACGGATATCGCATCAAAATGAAAGCATCCGCCAATCCTTGCACACCAAT 314742 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752 ||||||||||| |||| ||| ||||| Sbjct 314741 ACCAATTGGTCGATGACGTTTGTTAGA 314715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || ||||| ||||| || ||| || | || ||||||||||| | ||| ||| Sbjct 314161 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCAC 314102 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| ||||||||| | || || | | |||| |||| ||| |||||||| || Sbjct 314101 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 314042 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| | | || |||||| ||| | ||| |||| |||||| Sbjct 314041 GCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 313982 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || || | ||| || || ||||| ||||| ||||| Sbjct 313981 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 313947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060578091320