Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 288 8e-72 seq2 131 1e-24 seq1 104 2e-16 seq6 100 2e-15 seq5 93.3 3e-13 seq3296 87.8 1e-11 seq3072 87.8 1e-11 >seq4 Length=12041450 Score = 288 bits (318), Expect = 8e-72 Identities = 395/548 (72%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || || ||||||||||| || | || |||||||| Sbjct 10497540 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 10497599 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||||||||||| |||||||| || | || || ||| ||||||| ||||||| Sbjct 10497600 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 10497659 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | |||| ||||| |||||| |||||| | |||||| ||| Sbjct 10497660 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 10497719 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||||||||| || || | || || | | ||| ||||| | | || ||| | Sbjct 10497720 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 10497779 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288 |||||||| |||||||| ||| || || | || | |||| |||||| | ||| || Sbjct 10497780 GATATGAAACATTGGCCATTCAAAGTTATCAACG---ATGGATCGAAACCTAAAATTCAA 10497836 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | | | |||| || |||| |||||||| |||| ||||||| || Sbjct 10497837 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTT 10497895 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||| ||||| |||| ||| |||| | | || || |||| |||||| ||||| Sbjct 10497896 AGTGAAGATGAAGGAAACTGCCGAGGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 10497955 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || ||||||||||| || || || ||||| || || ||||| |||||| || Sbjct 10497956 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 10498015 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| ||||| Sbjct 10498016 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 10498075 Query 550528 ACTTGATA 550535 |||||||| Sbjct 10498076 ACTTGATA 10498083 Score = 86.0 bits (94), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| ||||| || ||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 10040204 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 10040145 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596 ||||| || | |||| | |||| | ||| Sbjct 10040144 AATGGTATAGTTCATGTCAGTGCTCGAGAT 10040115 >seq2 Length=11347909 Score = 131 bits (144), Expect = 1e-24 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| |||||||||| ||||||||||| ||| ||| |||| | | Sbjct 3746210 CCCGAAGAAATTTCAGCTATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATTTG 3746151 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||| | |||| || | || || || || ||||| || || | |||||| Sbjct 3746150 GGCAAAGAAGTGAAAAATGCTGTCGTCACGGTTCCCGCTTATTTCAACGATGCGCAACGT 3746091 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 |||||||| |||||||| || |||||||| ||||||||| |||| || ||||| ||| Sbjct 3746090 CAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAA 3746031 Query 550502 CC 550503 || Sbjct 3746030 CC 3746029 Score = 96.9 bits (106), Expect = 3e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 || || |||||| |||| ||||| ||| || | | || ||||| || ||| ||||| Sbjct 3745065 GTCACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAACCATCTTCTTGGG 3745006 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551 | || || | || || ||||| ||||| ||||| ||||| |||||||||||||| Sbjct 3745005 AAATTCGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 3744946 Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||||| | || || |||||| | || || || Sbjct 3744945 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 3744908 >seq1 Length=3447954 Score = 104 bits (114), Expect = 2e-16 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||||||||||||||| |||||||||||||| || | Sbjct 758696 CCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 758637 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||| ||||||| || | || ||| | || | ||||| ||||| || Sbjct 758636 TTCACATTCTCAACAGTATCAG-ATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAG 758578 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 758577 GGTCTTAACAAAAATTTGCAT 758557 Score = 104 bits (114), Expect = 2e-16 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| ||||||||||| |||||||||||||| || | Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||||| ||||||| || | || ||| | || | ||||| ||||| || Sbjct 793387 TTTACATTCTCAACAGTATCAG-ATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAG 793329 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 793328 GGTCTTAACAAAAATTTGCAT 793308 Score = 100 bits (110), Expect = 2e-15 Identities = 120/161 (75%), Gaps = 8/161 (5%) Strand=Plus/Minus Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377 ||||| || || || ||||||||||| || | |||||||| || |||||||| |||| Sbjct 814256 AATCTACACTTTACTTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTT 814197 Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTCGAGA 563433 |||| |||||||| ||| || ||||||| ||| |||| | || ||| ||| Sbjct 814196 TATCCTGAATTTTACCTTTCACATTTTCAATTG----AGTCTGAGGGTTCCACTTCCAGA 814141 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| ||||| ||||| |||||||| || || || ||||| Sbjct 814140 GTAATGGTTTTCCCAGTCAGAGTTTTGACAAATATCTGCAT 814100 Score = 100 bits (110), Expect = 2e-15 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||| Sbjct 850347 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 850288 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 || ||| || || |||||||||| || ||| ||| | ||| | ||||| || Sbjct 850287 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 850229 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||| ||||||||||| Sbjct 850228 AGTAAGGGTCTTAACAAAAATTTGCAT 850202 Score = 96.9 bits (106), Expect = 3e-14 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393 ||| || ||||| | | ||| ||||| || |||||||||||||||||||||||||| Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629 Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAA 563452 ||| || || |||||||||| || | || ||| | || | ||||| || |||| Sbjct 798628 TTTCACATTTTCTATTGTATCAG-ATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAA 798570 Query 563453 GAGTTTTAACGAAAATTTGCAT 563474 |||| ||||| ||||||||||| Sbjct 798569 GAGTCTTAACAAAAATTTGCAT 798548 Score = 96.9 bits (106), Expect = 3e-14 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | ||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 863389 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449 ||| || ||| || || || || || || ||| || || | |||||| |||| Sbjct 863388 CTTTTAACATTCTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 863331 Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || || ||||| || |||||| Sbjct 863330 TAAGTGTCTTCACGAATATCTGCATA 863305 Score = 96.9 bits (106), Expect = 3e-14 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | || ||||| || |||||||| ||||||||||||||| Sbjct 889582 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 889523 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 || ||| || || |||||||||| || ||| ||| | ||| | ||||| || Sbjct 889522 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 889464 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||| ||||||||||| Sbjct 889463 AGTAAGGGTCTTAACAAAAATTTGCAT 889437 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||| ||||| || ||||||||||| ||||| || ||||| | Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || | || ||| | || | ||||| || ||||| Sbjct 816485 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 816427 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 816426 AGTCTTAACAAAAATTTGCAT 816406 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | || |||||||||||| ||||| |||||||| ||||||||||| Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || ||||| ||||||| || ||| ||| | || | ||||| ||||| Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGT 864013 Query 563451 AAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || ||||| |||||| Sbjct 864012 TAATGTTTTCACAAAAATCTGCATA 863988 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || || || Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTGAG 786672 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 786671 AGTCTTAACAAAAATTTGCAT 786651 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || | || ||| | || | ||||| || ||||| Sbjct 787298 TTTACATTCTCTATTGTATCAG-ATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 787240 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 787239 GGTCTTAACAAAAATTTGCAT 787219 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 793162 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 793103 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 ||||| ||| |||||||||| || | || ||| | || | ||||| || || Sbjct 793102 CCCTTTACATTCTCTATTGTATCAG-ATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGT 793044 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||||||||| Sbjct 793043 AAGAGTCTTAACAAAAATTTGCAT 793020 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || |||||||| ||||||||||||||||| | Sbjct 816261 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 816202 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || | || |||| ||||| || | |||| || | ||| | | | | ||||||| Sbjct 816201 TTCTCATTTTCTATTGAATCAGATGGGTGTAC-TTACAAAGTGATTGATCTGTCAGTAAG 816143 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 816142 AGTCTTAACAAAAATTTGCAT 816122 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||| |||||||| || ||||| | Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || || |||||||||| || ||| | | || || | ||||| || || || Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAG-GTGATGGTTTTGCCGGTGAG 840032 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 840031 GGTCTTAACAAAAATTTGCAT 840011 >seq6 Length=6373445 Score = 100 bits (110), Expect = 2e-15 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711 ||| || || |||||||| |||||||| || || | || |||||||||||||||| Sbjct 3048102 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 3048161 Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770 | |||||||| ||||| || ||| ||||||||| | ||| ||| | ||| | | | Sbjct 3048162 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATT-GCAGAAGCATACGATG 3048220 Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 |||| |||| || |||||||| ||| || |||| ||||||| Sbjct 3048221 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 3048264 >seq5 Length=5663831 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599 ||||| |||| ||||||| || | ||||||| |||||||| | || | | |||| Sbjct 1428387 GAACGGCTTGGTCGATGGATAGATTTTGAAAATGACTATAAAACTTTATATCCAAGTTTC 1428446 Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659 ||||||||||| |||| ||| ||||| | || | ||| | | | |||| Sbjct 1428447 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 1428506 Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719 ||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | | Sbjct 1428507 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 1428566 Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745 |||||||| |||||| |||||||| Sbjct 1428567 CAAAATTACAAAGAAGTCGTTGATCC 1428592 >seq3296 Length=842 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/146 (74%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| | | ||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 407 TTACCTGCAAAGACTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 466 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449 ||| || ||| || || || || || || ||| || || | |||||| |||| Sbjct 467 CTTTTAACATTCTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 524 Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || || ||||| || ||||| Sbjct 525 TAAGTGTCTTCACGAATATAAGCATA 550 >seq3072 Length=446 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| | Sbjct 235 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 176 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||| ||||||| || ||| ||| | || | ||||| ||||| | Sbjct 175 TTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 117 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 ||||| || ||||| |||||| Sbjct 116 TGTTTTCACAAAAATCTGCATA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028933053607870