Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq4 288 8e-72
seq2 131 1e-24
seq1 104 2e-16
seq6 100 2e-15
seq5 93.3 3e-13
seq3296 87.8 1e-11
seq3072 87.8 1e-11
>seq4
Length=12041450
Score = 288 bits (318), Expect = 8e-72
Identities = 395/548 (72%), Gaps = 8/548 (1%)
Strand=Plus/Plus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
||||| || || ||||| || || || || ||||||||||| || | || ||||||||
Sbjct 10497540 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 10497599
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||||||||||||||| |||||||| || | || || ||| ||||||| |||||||
Sbjct 10497600 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 10497659
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | |||| ||||| |||||| |||||| | |||||| |||
Sbjct 10497660 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 10497719
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| |||||||||| || || | || || | | ||| ||||| | | || ||| |
Sbjct 10497720 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 10497779
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288
|||||||| |||||||| ||| || || | || | |||| |||||| | ||| ||
Sbjct 10497780 GATATGAAACATTGGCCATTCAAAGTTATCAACG---ATGGATCGAAACCTAAAATTCAA 10497836
Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347
| | | | | |||| || |||| |||||||| |||| ||||||| ||
Sbjct 10497837 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTT 10497895
Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407
| |||| ||||| |||| ||| |||| | | || || |||| |||||| |||||
Sbjct 10497896 AGTGAAGATGAAGGAAACTGCCGAGGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 10497955
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
||||| || ||||||||||| || || || ||||| || || ||||| |||||| ||
Sbjct 10497956 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 10498015
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
| |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| |||||
Sbjct 10498016 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 10498075
Query 550528 ACTTGATA 550535
||||||||
Sbjct 10498076 ACTTGATA 10498083
Score = 86.0 bits (94), Expect = 5e-11
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
||||| ||||| || ||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 10040204 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 10040145
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596
||||| || | |||| | |||| | |||
Sbjct 10040144 AATGGTATAGTTCATGTCAGTGCTCGAGAT 10040115
>seq2
Length=11347909
Score = 131 bits (144), Expect = 1e-24
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
|| ||| |||||||| |||||||||| ||||||||||| ||| ||| |||| | |
Sbjct 3746210 CCCGAAGAAATTTCAGCTATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATTTG 3746151
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| ||||||| | |||| || | || || || || ||||| || || | ||||||
Sbjct 3746150 GGCAAAGAAGTGAAAAATGCTGTCGTCACGGTTCCCGCTTATTTCAACGATGCGCAACGT 3746091
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
|||||||| |||||||| || |||||||| ||||||||| |||| || ||||| |||
Sbjct 3746090 CAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAA 3746031
Query 550502 CC 550503
||
Sbjct 3746030 CC 3746029
Score = 96.9 bits (106), Expect = 3e-14
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491
|| || |||||| |||| ||||| ||| || | | || ||||| || ||| |||||
Sbjct 3745065 GTCACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAACCATCTTCTTGGG 3745006
Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551
| || || | || || ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 3745005 AAATTCGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 3744946
Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
||||||||||| | || || |||||| | || || ||
Sbjct 3744945 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 3744908
>seq1
Length=3447954
Score = 104 bits (114), Expect = 2e-16
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||||||||||||||| |||||||||||||| || |
Sbjct 758696 CCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 758637
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||| ||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 758636 TTCACATTCTCAACAGTATCAG-ATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAG 758578
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 758577 GGTCTTAACAAAAATTTGCAT 758557
Score = 104 bits (114), Expect = 2e-16
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| ||||||||||| |||||||||||||| || |
Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||||| ||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 793387 TTTACATTCTCAACAGTATCAG-ATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAG 793329
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 793328 GGTCTTAACAAAAATTTGCAT 793308
Score = 100 bits (110), Expect = 2e-15
Identities = 120/161 (75%), Gaps = 8/161 (5%)
Strand=Plus/Minus
Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377
||||| || || || ||||||||||| || | |||||||| || |||||||| ||||
Sbjct 814256 AATCTACACTTTACTTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTT 814197
Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TTCGAGA 563433
|||| |||||||| ||| || ||||||| ||| |||| | || ||| |||
Sbjct 814196 TATCCTGAATTTTACCTTTCACATTTTCAATTG----AGTCTGAGGGTTCCACTTCCAGA 814141
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||| ||||| ||||| |||||||| || || || |||||
Sbjct 814140 GTAATGGTTTTCCCAGTCAGAGTTTTGACAAATATCTGCAT 814100
Score = 100 bits (110), Expect = 2e-15
Identities = 112/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | ||| ||||| || |||||||| |||||||||||||||
Sbjct 850347 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 850288
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
|| ||| || || |||||||||| || ||| ||| | ||| | ||||| ||
Sbjct 850287 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 850229
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| || ||||| |||||||||||
Sbjct 850228 AGTAAGGGTCTTAACAAAAATTTGCAT 850202
Score = 96.9 bits (106), Expect = 3e-14
Identities = 108/142 (76%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 563334 TCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTG 563393
||| || ||||| | | ||| ||||| || ||||||||||||||||||||||||||
Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629
Query 563394 TTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAA 563452
||| || || |||||||||| || | || ||| | || | ||||| || ||||
Sbjct 798628 TTTCACATTTTCTATTGTATCAG-ATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAA 798570
Query 563453 GAGTTTTAACGAAAATTTGCAT 563474
|||| ||||| |||||||||||
Sbjct 798569 GAGTCTTAACAAAAATTTGCAT 798548
Score = 96.9 bits (106), Expect = 3e-14
Identities = 110/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | ||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 863389
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449
||| || ||| || || || || || || ||| || || | |||||| ||||
Sbjct 863388 CTTTTAACATTCTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 863331
Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475
|||| || || ||||| || ||||||
Sbjct 863330 TAAGTGTCTTCACGAATATCTGCATA 863305
Score = 96.9 bits (106), Expect = 3e-14
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | || ||||| || |||||||| |||||||||||||||
Sbjct 889582 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 889523
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
|| ||| || || |||||||||| || ||| ||| | ||| | ||||| ||
Sbjct 889522 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 889464
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| || ||||| |||||||||||
Sbjct 889463 AGTAAGGGTCTTAACAAAAATTTGCAT 889437
Score = 95.1 bits (104), Expect = 1e-13
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||| ||||| || ||||||||||| ||||| || ||||| |
Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || | || ||| | || | ||||| || |||||
Sbjct 816485 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 816427
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| ||||| |||||||||||
Sbjct 816426 AGTCTTAACAAAAATTTGCAT 816406
Score = 87.8 bits (96), Expect = 1e-11
Identities = 108/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | || |||||||||||| ||||| |||||||| |||||||||||
Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
||| || ||||| ||||||| || ||| ||| | || | ||||| |||||
Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGT 864013
Query 563451 AAGAGTTTTAACGAAAATTTGCATA 563475
| ||||| || ||||| ||||||
Sbjct 864012 TAATGTTTTCACAAAAATCTGCATA 863988
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||| ||||| || ||||||||||| ||||| || |||||
Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || || ||
Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTGAG 786672
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| ||||| |||||||||||
Sbjct 786671 AGTCTTAACAAAAATTTGCAT 786651
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||| ||||| || ||||||||||| ||||| || |||||
Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || | || ||| | || | ||||| || |||||
Sbjct 787298 TTTACATTCTCTATTGTATCAG-ATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 787240
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 787239 GGTCTTAACAAAAATTTGCAT 787219
Score = 86.0 bits (94), Expect = 5e-11
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | | ||| ||||| || ||||||||||| ||||| || |||||
Sbjct 793162 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 793103
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450
||||| ||| |||||||||| || | || ||| | || | ||||| || ||
Sbjct 793102 CCCTTTACATTCTCTATTGTATCAG-ATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGT 793044
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| |||||||||||
Sbjct 793043 AAGAGTCTTAACAAAAATTTGCAT 793020
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||| ||||| || |||||||| ||||||||||||||||| |
Sbjct 816261 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 816202
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| | || |||| ||||| || | |||| || | ||| | | | | |||||||
Sbjct 816201 TTCTCATTTTCTATTGAATCAGATGGGTGTAC-TTACAAAGTGATTGATCTGTCAGTAAG 816143
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| ||||| |||||||||||
Sbjct 816142 AGTCTTAACAAAAATTTGCAT 816122
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || |||||||| |||||||| || ||||| |
Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || || |||||||||| || ||| | | || || | ||||| || || ||
Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAG-GTGATGGTTTTGCCGGTGAG 840032
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 840031 GGTCTTAACAAAAATTTGCAT 840011
>seq6
Length=6373445
Score = 100 bits (110), Expect = 2e-15
Identities = 122/164 (74%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711
||| || || |||||||| |||||||| || || | || ||||||||||||||||
Sbjct 3048102 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 3048161
Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770
| |||||||| ||||| || ||| ||||||||| | ||| ||| | ||| | | |
Sbjct 3048162 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATT-GCAGAAGCATACGATG 3048220
Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814
|||| |||| || |||||||| ||| || |||| |||||||
Sbjct 3048221 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 3048264
>seq5
Length=5663831
Score = 93.3 bits (102), Expect = 3e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599
||||| |||| ||||||| || | ||||||| |||||||| | || | | ||||
Sbjct 1428387 GAACGGCTTGGTCGATGGATAGATTTTGAAAATGACTATAAAACTTTATATCCAAGTTTC 1428446
Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659
||||||||||| |||| ||| ||||| | || | ||| | | | ||||
Sbjct 1428447 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 1428506
Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719
||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | |
Sbjct 1428507 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 1428566
Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745
|||||||| |||||| ||||||||
Sbjct 1428567 CAAAATTACAAAGAAGTCGTTGATCC 1428592
>seq3296
Length=842
Score = 87.8 bits (96), Expect = 1e-11
Identities = 108/146 (74%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| | | ||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 407 TTACCTGCAAAGACTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 466
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449
||| || ||| || || || || || || ||| || || | |||||| ||||
Sbjct 467 CTTTTAACATTCTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 524
Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475
|||| || || ||||| || |||||
Sbjct 525 TAAGTGTCTTCACGAATATAAGCATA 550
>seq3072
Length=446
Score = 87.8 bits (96), Expect = 1e-11
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 235 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 176
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||| ||||||| || ||| ||| | || | ||||| ||||| |
Sbjct 175 TTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 117
Query 563454 AGTTTTAACGAAAATTTGCATA 563475
||||| || ||||| ||||||
Sbjct 116 TGTTTTCACAAAAATCTGCATA 95
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028933053607870
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