Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 3e-15
seq4 89.7 4e-13
>seq1
Length=3447954
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||
Sbjct 814576 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCT 814517
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 814516 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 814457
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 814456 TCAACGTTTTCACAAATATCTGCATC 814431
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||
Sbjct 839522 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 839463
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 839462 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 839403
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 839402 TCAACGTTTTCACAAATATCTGCATC 839377
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||
Sbjct 849713 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCT 849654
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 849653 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 849594
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 849593 TCAACGTTTTCACAAATATCTGCATC 849568
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||
Sbjct 888948 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCT 888889
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 888888 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 888829
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| || ||||||
Sbjct 888828 TCAACGTTTTCACAAATATTTGCATC 888803
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|||||||||||| ||||| ||||| ||||| | |||| ||||| || || ||| ||
Sbjct 814243 CTTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 814184
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
||| ||| | | || ||||| | ||||| |||| ||||| ||||| || ||
Sbjct 814183 ACCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 814124
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||| ||||| ||||||||
Sbjct 814123 CAGAGTTTTGACAAATATCTGCAT 814100
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|||||| ||||| ||||| ||||||||||| | |||| ||||| || || ||| ||
Sbjct 839189 CTTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 839130
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
||| ||| | | || ||||| | ||||| |||| ||||| ||||| || ||
Sbjct 839129 ACCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 839070
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||| ||||| ||||||||
Sbjct 839069 CAGAGTTTTGACAAATATCTGCAT 839046
>seq4
Length=12041450
Score = 89.7 bits (98), Expect = 4e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134
|||| ||||||| || | ||||||||| | || || |||||| ||| ||| |||
Sbjct 7642458 GATTCGTTCACATATCAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 7642517
Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194
| | |||||| | | ||||| || || ||||||||||| |||| | || || ||
Sbjct 7642518 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 7642577
Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254
|| | ||||||| |||||| | || | ||||| || || || || ||||| |||||
Sbjct 7642578 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCA 7642637
Query 9255 TCCCACCGG 9263
|| || ||
Sbjct 7642638 GCCGACAGG 7642646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380905737307749
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |