Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4 338 4e-87 seq1 120 2e-21 seq2 107 1e-17 seq6 93.3 3e-13 seq5152 91.5 1e-12 seq5 89.7 3e-12 seq3791 87.8 1e-11 >seq4 Length=12041450 Score = 338 bits (374), Expect = 4e-87 Identities = 444/610 (73%), Gaps = 9/610 (1%) Strand=Plus/Plus Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376 ||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || | Sbjct 10497528 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTC 10497587 Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436 || |||||||||| ||||| |||||||| || ||||| ||| | || || ||| ||| Sbjct 10497588 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 10497647 Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496 ||| |||| || || || || | || ||||||||||| || ||| |||||| ||| | Sbjct 10497648 GTTGCTTTCACCGATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 10497707 Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556 |||||| |||||| |||||||||| || || | || |||||| ||||||||| | Sbjct 10497708 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 10497767 Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616 | || || ||||||||| |||||||| || || || || || | ||| ||||| Sbjct 10497768 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAGTTATCAACGATGGATCGAAACCT 10497827 Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674 | || ||| |||||| ||| || | || |||| |||| ||| |||| | Sbjct 10497828 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 10497885 Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACT 474733 | ||||| |||| || ||||| |||| | |||| | ||| | ||| || || | Sbjct 10497886 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAG-GCTTATTTGGGAAAAACTGTTAAG 10497944 Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| |||||||||||||| ||||||||||| |||||||| ||||| || || ||||| Sbjct 10497945 GATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGAC 10498004 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || ||| Sbjct 10498005 GCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCA 10498064 Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA---T 474910 |||||||||| ||||||| || || | ||| ||||||| | || ||||| | Sbjct 10498065 ATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTT 10498124 Query 474911 TGTGGAGGTA 474920 |||| |||| Sbjct 10498125 GGTGGTGGTA 10498134 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| ||||| || || | |||||||| ||||| ||||||||||||||||| |||||| Sbjct 10040204 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 10040145 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 |||||||| || |||| | |||| | ||| Sbjct 10040144 AATGGTATAGTTCATGTCAGTGCTCGAGAT 10040115 >seq1 Length=3447954 Score = 120 bits (132), Expect = 2e-21 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||||||||| || |||||||||||||| || || || || | Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||||| || | | || ||||| | || ||||| ||||| || Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGG-TGATCGTTTTGCCGGTAAG 816427 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 816426 AGTCTTAACAAAAATTTG 816409 Score = 113 bits (124), Expect = 3e-19 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || ||||||||||| | |||||||||||| || |||||||| || || |||||||| || Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024 Query 480690 TGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 ||| ||| ||| || ||||||| || | | || ||| ||| || ||||| ||||| Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGT 786965 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| |||||||| Sbjct 786964 GAGGGTCTTAACAAAAATTTG 786944 Score = 113 bits (124), Expect = 3e-19 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 480632 TCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTG 480691 |||||| ||||| | |||||||||||| || ||||||||||| || |||||||| || Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629 Query 480692 TTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGA 480750 ||| ||| ||| || ||||||| || | | || ||||| | || ||||| ||||| | Sbjct 798628 TTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGG-TGATCGTTTTGCCGGTAA 798570 Query 480751 GAGTCTTAACGAAAATTTG 480769 |||||||||| |||||||| Sbjct 798569 GAGTCTTAACAAAAATTTG 798551 Score = 111 bits (122), Expect = 1e-18 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||||||||||||||| || || ||||||||||| | Sbjct 758696 CCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 758637 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||| |||||||| || | | || ||| || || ||||| || || || Sbjct 758636 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 758578 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 758577 GGTCTTAACAAAAATTTG 758560 Score = 107 bits (118), Expect = 1e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | |||||||||||| || |||||||||||||| || || || || Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||||| | || ||||| |||||||| Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGGTGAG 786672 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 786671 AGTCTTAACAAAAATTTG 786654 Score = 107 bits (118), Expect = 1e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| ||||||||||| || || ||||||||||| | Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||| |||||||| || | | || ||| || || ||||| || || || Sbjct 793387 TTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 793329 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 793328 GGTCTTAACAAAAATTTG 793311 Score = 104 bits (114), Expect = 2e-16 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||| || || |||||||| Sbjct 850347 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 850288 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| ||| || ||||||| || | | || ||| || || ||||| || Sbjct 850287 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 850229 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| |||||||| Sbjct 850228 AGTAAGGGTCTTAACAAAAATTTG 850205 Score = 102 bits (112), Expect = 5e-16 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| |||||||| || | |||||||||||| || |||||||||||||| || || || Sbjct 793166 TTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 793107 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || || ||| || || ||||||| || | | || ||||| | || ||||| | Sbjct 793106 TTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGG-TGATCGTTTTGC 793048 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||||||||| |||||||| Sbjct 793047 CGGTAAGAGTCTTAACAAAAATTTG 793023 Score = 102 bits (112), Expect = 5e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||| || || || || || || | Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| ||| || ||||||| || | | || ||| ||| || ||||| |||||||| Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATGGTTTTGCCGGTGAG 840032 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 840031 GGTCTTAACAAAAATTTG 840014 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | ||| |||||||| || |||||||| || || |||||||| Sbjct 889582 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 889523 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| ||| || ||||||| || | | || ||| || || ||||| || Sbjct 889522 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 889464 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| |||||||| Sbjct 889463 AGTAAGGGTCTTAACAAAAATTTG 889440 Score = 98.7 bits (108), Expect = 6e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | |||||||||||| || |||||||||||||| || || || || Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||| ||| || ||||| ||||| || Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAA-GGTGATCGTTTTGCCGGTAAG 787240 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 787239 GGTCTTAACAAAAATTTG 787222 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | |||||||||||| || |||||||| || || |||||||| || | Sbjct 816261 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 816202 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || || ||| || | ||||| || ||| | || ||| || || | | | | || || Sbjct 816201 TTCTCATTTTCTATTGAATCAGATGGGTGTACTTACAA-AGTGATTGATCTGTCAGTAAG 816143 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 816142 AGTCTTAACAAAAATTTG 816125 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| |||||||||||||| | Sbjct 839517 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 839458 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 839457 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 839398 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 839397 GTTTTCACAAATATCTG 839381 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| ||||| |||||||| | Sbjct 888943 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 888884 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 888883 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 888824 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || ||||| Sbjct 888823 GTTTTCACAAATATTTG 888807 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| ||||| |||||||| | Sbjct 814571 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 814512 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 814511 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 814452 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 814451 GTTTTCACAAATATCTG 814435 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| ||||| |||||||| | Sbjct 849708 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 849649 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 849648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 849589 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 849588 GTTTTCACAAATATCTG 849572 >seq2 Length=11347909 Score = 107 bits (118), Expect = 1e-17 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697 ||||||| ||| || | || ||| ||||||| | |||||||| ||||||||| Sbjct 3746231 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCTATGGTTTTGTTGAAAATGAAA 3746172 Query 474698 CAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAG 474755 ||| || |||| ||| | || ||||||| | |||| || | || ||||| | Sbjct 3746171 GAAATTGCCGAAGCT--TATTTGGGCAAAGAAGTGAAAAATGCTGTCGTCACGGTTCCCG 3746114 Query 474756 CATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTA 474815 | ||||| || ||| | ||||||||||| || |||||||| || | ||||| ||||||| Sbjct 3746113 CTTATTTCAACGATGCGCAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTA 3746054 Query 474816 ATGTTTTACGTATTATTAATGAACC 474840 ||||| | || || || || ||||| Sbjct 3746053 ATGTTGTTCGAATCATCAACGAACC 3746029 >seq6 Length=6373445 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 ||||| || || |||||||||||| || | || |||||||||||||||||| || Sbjct 3048109 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 3048168 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233 ||||| ||||| || ||| ||||||||| | || | || || | |||| Sbjct 3048169 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 3048228 Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277 ||| | | || |||||| |||| ||||||||||| |||||||| Sbjct 3048229 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 3048272 >seq5152 Length=332 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/141 (77%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || ||||||||||| | |||||||||||| || |||||||| || || |||||||| || Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246 Query 480690 TGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 ||| ||| ||| || ||||||| || | | || ||| ||| || |||| || || Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGAT-CTTTTGCC-GT 303 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 || |||||||| |||||||| Sbjct 304 GAAGGTCTTAACAAAAATTTG 324 >seq5 Length=5663831 Score = 89.7 bits (98), Expect = 3e-12 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134 |||| ||||||| ||| || | ||||| |||||||| | || || ||| ||||||| Sbjct 1428394 TTGGTCGATGGATAGATTTTGAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 1428453 Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193 |||| ||| ||| ||||| || ||| | ||||| || | | |||| ||| Sbjct 1428454 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 1428512 Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253 || ||||| | |||||||| |||| || ||||| || ||||||| | ||||||| Sbjct 1428513 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 1428572 Query 296254 TATAAAGAGATTATTGATCCATCT-GTTACTTGTTGTTTTGAAATTATTTCT 296304 || ||||| | ||||||| || |||| | || ||| || || ||||| Sbjct 1428573 TACAAAGAAGTCGTTGATCCTGCTAGTTAGTAATTCTTT--AATTTGTTTCT 1428622 >seq3791 Length=500 Score = 87.8 bits (96), Expect = 1e-11 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | |||||| ||||| || |||||||||||||| || || || || | Sbjct 293 CCAGCAAAAATCACACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 352 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | ||| | || || ||||| ||||| || Sbjct 353 TTCACATTCTCTATTGTATCAGATGGCTCTA-CTTCTTGTGTGATCGTTTTGCCGGTAAG 411 Query 480752 AGTCTTAACGAAAATTT 480768 ||||||||| |||||| Sbjct 412 AGTCTTAACACAAATTT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267884812630724