Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq4 338 4e-87
seq1 120 2e-21
seq2 107 1e-17
seq6 93.3 3e-13
seq5152 91.5 1e-12
seq5 89.7 3e-12
seq3791 87.8 1e-11
>seq4
Length=12041450
Score = 338 bits (374), Expect = 4e-87
Identities = 444/610 (73%), Gaps = 9/610 (1%)
Strand=Plus/Plus
Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376
||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || |
Sbjct 10497528 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTC 10497587
Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436
|| |||||||||| ||||| |||||||| || ||||| ||| | || || ||| |||
Sbjct 10497588 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 10497647
Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496
||| |||| || || || || | || ||||||||||| || ||| |||||| ||| |
Sbjct 10497648 GTTGCTTTCACCGATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 10497707
Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556
|||||| |||||| |||||||||| || || | || |||||| ||||||||| |
Sbjct 10497708 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 10497767
Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616
| || || ||||||||| |||||||| || || || || || | ||| |||||
Sbjct 10497768 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAGTTATCAACGATGGATCGAAACCT 10497827
Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674
| || ||| |||||| ||| || | || |||| |||| ||| |||| |
Sbjct 10497828 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 10497885
Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACT 474733
| ||||| |||| || ||||| |||| | |||| | ||| | ||| || || |
Sbjct 10497886 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAG-GCTTATTTGGGAAAAACTGTTAAG 10497944
Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793
||||| |||||||||||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 10497945 GATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGAC 10498004
Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853
|| |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || |||
Sbjct 10498005 GCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCA 10498064
Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA---T 474910
|||||||||| ||||||| || || | ||| ||||||| | || ||||| |
Sbjct 10498065 ATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTT 10498124
Query 474911 TGTGGAGGTA 474920
|||| ||||
Sbjct 10498125 GGTGGTGGTA 10498134
Score = 91.5 bits (100), Expect = 1e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| ||||| || || | |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 10040204 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 10040145
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179
|||||||| || |||| | |||| | |||
Sbjct 10040144 AATGGTATAGTTCATGTCAGTGCTCGAGAT 10040115
>seq1
Length=3447954
Score = 120 bits (132), Expect = 2e-21
Identities = 111/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||||||||| || |||||||||||||| || || || || |
Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| ||||||| || | | || ||||| | || ||||| ||||| ||
Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGG-TGATCGTTTTGCCGGTAAG 816427
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 816426 AGTCTTAACAAAAATTTG 816409
Score = 113 bits (124), Expect = 3e-19
Identities = 111/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689
|| ||||||||||| | |||||||||||| || |||||||| || || |||||||| ||
Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024
Query 480690 TGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748
||| ||| ||| || ||||||| || | | || ||| ||| || ||||| |||||
Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGT 786965
Query 480749 GAGAGTCTTAACGAAAATTTG 480769
||| |||||||| ||||||||
Sbjct 786964 GAGGGTCTTAACAAAAATTTG 786944
Score = 113 bits (124), Expect = 3e-19
Identities = 110/139 (79%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 480632 TCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTG 480691
|||||| ||||| | |||||||||||| || ||||||||||| || |||||||| ||
Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629
Query 480692 TTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGA 480750
||| ||| ||| || ||||||| || | | || ||||| | || ||||| ||||| |
Sbjct 798628 TTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGG-TGATCGTTTTGCCGGTAA 798570
Query 480751 GAGTCTTAACGAAAATTTG 480769
|||||||||| ||||||||
Sbjct 798569 GAGTCTTAACAAAAATTTG 798551
Score = 111 bits (122), Expect = 1e-18
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||||||||||||||| || || ||||||||||| |
Sbjct 758696 CCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 758637
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||| |||||||| || | | || ||| || || ||||| || || ||
Sbjct 758636 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 758578
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 758577 GGTCTTAACAAAAATTTG 758560
Score = 107 bits (118), Expect = 1e-17
Identities = 108/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||||||||| || |||||||||||||| || || || ||
Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||||| | || ||||| ||||||||
Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGGTGAG 786672
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 786671 AGTCTTAACAAAAATTTG 786654
Score = 107 bits (118), Expect = 1e-17
Identities = 108/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| ||||||||||| || || ||||||||||| |
Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||| |||||||| || | | || ||| || || ||||| || || ||
Sbjct 793387 TTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 793329
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 793328 GGTCTTAACAAAAATTTG 793311
Score = 104 bits (114), Expect = 2e-16
Identities = 111/144 (77%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 850347 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 850288
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 850287 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 850229
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||| ||||||||
Sbjct 850228 AGTAAGGGTCTTAACAAAAATTTG 850205
Score = 102 bits (112), Expect = 5e-16
Identities = 111/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685
|| ||| |||||||| || | |||||||||||| || |||||||||||||| || || ||
Sbjct 793166 TTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 793107
Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744
|| || ||| || || ||||||| || | | || ||||| | || ||||| |
Sbjct 793106 TTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGG-TGATCGTTTTGC 793048
Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769
|||| ||||||||||| ||||||||
Sbjct 793047 CGGTAAGAGTCTTAACAAAAATTTG 793023
Score = 102 bits (112), Expect = 5e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||| || || || || || || |
Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| ||| || ||||||| || | | || ||| ||| || ||||| ||||||||
Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATGGTTTTGCCGGTGAG 840032
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 840031 GGTCTTAACAAAAATTTG 840014
Score = 100 bits (110), Expect = 2e-15
Identities = 110/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | ||| |||||||| || |||||||| || || ||||||||
Sbjct 889582 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 889523
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 889522 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 889464
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||| ||||||||
Sbjct 889463 AGTAAGGGTCTTAACAAAAATTTG 889440
Score = 98.7 bits (108), Expect = 6e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||||||||| || |||||||||||||| || || || ||
Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| ||| || ||||| ||||| ||
Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAA-GGTGATCGTTTTGCCGGTAAG 787240
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 787239 GGTCTTAACAAAAATTTG 787222
Score = 89.7 bits (98), Expect = 3e-12
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||||||||| || |||||||| || || |||||||| || |
Sbjct 816261 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 816202
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| || ||| || | ||||| || ||| | || ||| || || | | | | || ||
Sbjct 816201 TTCTCATTTTCTATTGAATCAGATGGGTGTACTTACAA-AGTGATTGATCTGTCAGTAAG 816143
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||| ||||||||
Sbjct 816142 AGTCTTAACAAAAATTTG 816125
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| |||||||||||||| |
Sbjct 839517 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 839458
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 839457 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 839398
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 839397 GTTTTCACAAATATCTG 839381
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| ||||| |||||||| |
Sbjct 888943 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 888884
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 888883 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 888824
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || |||||
Sbjct 888823 GTTTTCACAAATATTTG 888807
Score = 86.0 bits (94), Expect = 4e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| ||||| |||||||| |
Sbjct 814571 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 814512
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 814511 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 814452
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 814451 GTTTTCACAAATATCTG 814435
Score = 86.0 bits (94), Expect = 4e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| ||||| |||||||| |
Sbjct 849708 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 849649
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 849648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 849589
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 849588 GTTTTCACAAATATCTG 849572
>seq2
Length=11347909
Score = 107 bits (118), Expect = 1e-17
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697
||||||| ||| || | || ||| ||||||| | |||||||| |||||||||
Sbjct 3746231 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCTATGGTTTTGTTGAAAATGAAA 3746172
Query 474698 CAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAG 474755
||| || |||| ||| | || ||||||| | |||| || | || ||||| |
Sbjct 3746171 GAAATTGCCGAAGCT--TATTTGGGCAAAGAAGTGAAAAATGCTGTCGTCACGGTTCCCG 3746114
Query 474756 CATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTA 474815
| ||||| || ||| | ||||||||||| || |||||||| || | ||||| |||||||
Sbjct 3746113 CTTATTTCAACGATGCGCAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTA 3746054
Query 474816 ATGTTTTACGTATTATTAATGAACC 474840
||||| | || || || || |||||
Sbjct 3746053 ATGTTGTTCGAATCATCAACGAACC 3746029
>seq6
Length=6373445
Score = 93.3 bits (102), Expect = 3e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173
||||| || || |||||||||||| || | || |||||||||||||||||| ||
Sbjct 3048109 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 3048168
Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233
||||| ||||| || ||| ||||||||| | || | || || | ||||
Sbjct 3048169 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 3048228
Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277
||| | | || |||||| |||| ||||||||||| ||||||||
Sbjct 3048229 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 3048272
>seq5152
Length=332
Score = 91.5 bits (100), Expect = 1e-12
Identities = 108/141 (77%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689
|| ||||||||||| | |||||||||||| || |||||||| || || |||||||| ||
Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246
Query 480690 TGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748
||| ||| ||| || ||||||| || | | || ||| ||| || |||| || ||
Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGAT-CTTTTGCC-GT 303
Query 480749 GAGAGTCTTAACGAAAATTTG 480769
|| |||||||| ||||||||
Sbjct 304 GAAGGTCTTAACAAAAATTTG 324
>seq5
Length=5663831
Score = 89.7 bits (98), Expect = 3e-12
Identities = 162/232 (70%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134
|||| ||||||| ||| || | ||||| |||||||| | || || ||| |||||||
Sbjct 1428394 TTGGTCGATGGATAGATTTTGAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 1428453
Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193
|||| ||| ||| ||||| || ||| | ||||| || | | |||| |||
Sbjct 1428454 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 1428512
Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253
|| ||||| | |||||||| |||| || ||||| || ||||||| | |||||||
Sbjct 1428513 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 1428572
Query 296254 TATAAAGAGATTATTGATCCATCT-GTTACTTGTTGTTTTGAAATTATTTCT 296304
|| ||||| | ||||||| || |||| | || ||| || || |||||
Sbjct 1428573 TACAAAGAAGTCGTTGATCCTGCTAGTTAGTAATTCTTT--AATTTGTTTCT 1428622
>seq3791
Length=500
Score = 87.8 bits (96), Expect = 1e-11
Identities = 103/137 (75%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||| ||||| || |||||||||||||| || || || || |
Sbjct 293 CCAGCAAAAATCACACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 352
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | ||| | || || ||||| ||||| ||
Sbjct 353 TTCACATTCTCTATTGTATCAGATGGCTCTA-CTTCTTGTGTGATCGTTTTGCCGGTAAG 411
Query 480752 AGTCTTAACGAAAATTT 480768
||||||||| ||||||
Sbjct 412 AGTCTTAACACAAATTT 428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267884812630724
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