Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 3e-12 >seq7 Length=809302 Score = 86.0 bits (94), Expect = 3e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 || ||||| |||| | ||||| || || ||||| | ||| ||||| |||||||||| Sbjct 287864 GTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGA 287805 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCA 24766 ||||||||| ||||| |||||||||||||| | ||| ||| Sbjct 287804 CCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCA 287763 Score = 86.0 bits (94), Expect = 3e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 || ||||| |||| | ||||| || || ||||| | ||| ||||| |||||||||| Sbjct 315628 GTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGA 315569 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCA 24766 ||||||||| ||||| |||||||||||||| | ||| ||| Sbjct 315568 CCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCA 315527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253018835022725