Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4 304 2e-77 seq1 134 2e-26 seq4763 132 6e-26 seq3435 131 2e-25 seq3072 125 9e-24 seq2 125 9e-24 seq3296 123 3e-23 seq3791 105 9e-18 seq5152 102 1e-16 seq4234 100 4e-16 seq5 100 4e-16 >seq4 Length=12041450 Score = 304 bits (336), Expect = 2e-77 Identities = 555/809 (69%), Gaps = 9/809 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| || ||||| ||| |||||||| || | || ||| | Sbjct 10497540 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 10497599 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || || ||||| || ||||| || ||| || ||||| || || Sbjct 10497600 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 10497659 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || || |||||||||| ||||||||||| || |||| ||| ||| Sbjct 10497660 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 10497719 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| |||||||| || || ||||| ||| ||| || || Sbjct 10497720 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 10497779 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596 ||||| || | ||| | | ||||| | || || ||| || |||| ||| Sbjct 10497780 GATATGAAACATTGGCCATTCAAAGTTATCAACGATG-----GATCGAAACCTAAAATTC 10497834 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || |||| | || ||| ||| |||| | || |||||||| ||||||||| Sbjct 10497835 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGT 10497894 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||| ||||| || ||| |||| |||||||| || ||||| || Sbjct 10497895 TAGTGAAGATGAAGGAAACTGCCGAGGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 10497954 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || || || | ||||| || || |||||||| || ||||||| | | Sbjct 10497955 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 10498014 Query 195777 TTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || | ||| | || ||| || | || ||||| ||||||||||||||||||||||||||| Sbjct 10498015 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 10498073 Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || || || | || | || || |||||| |||| ||||| || ||||||||| Sbjct 10498074 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 10498133 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || |||||||| || || | | || |||| ||| || || || || ||| |||| ||| Sbjct 10498134 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 10498193 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015 ||||| |||||| | |||||||| || ||||| || | | |||||| | | Sbjct 10498194 GGTGACACTCATTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCT 10498253 Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 ||||| || ||||| ||||| || || || ||||| | || | ||||| | Sbjct 10498254 GAGTTTAAGCGCAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTG 10498313 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAAC 196104 | || || |||||||| || || || || Sbjct 10498314 CGCACAGCTTGTGAACGAGCGAAGCGCAC 10498342 Score = 84.2 bits (92), Expect = 3e-11 Identities = 189/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711 ||||||| ||||| ||||| || || ||| |||| || | ||||||||||| ||| | Sbjct 10499097 CTTGGAAAGTTCGAGTTGACTGGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAA 10499156 Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771 ||| || || || || || || || ||| | ||||| | || | ||||| | | Sbjct 10499157 GTTACGTTTGACATCGATGCCAACGGCATTTTGAACGTTTCTGCCGTTGACAAAAGTACC 10499216 Query 196772 GGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAAT 196830 ||| || || || || ||||| |||||||| || |||||| || ||||| || Sbjct 10499217 GGC-CGTCAAAACAAAATCACCATTACTAATGACAAAGGTCGGCTTAGCAAAGAGGACAT 10499275 Query 196831 TGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGGTATATGAGAAACA 196890 || |||||||| | ||| || || | || | | ||||| || | |||| || Sbjct 10499276 CGATCGTATGGTGCGAGAAGCCGACCAATATAAACAGGAAGATGA-AAAGCAGAGAGACC 10499334 Query 196891 G-ATGAAAGCTATAAATGATCTAGAAAATTCTACTTATA 196928 | || |||| | ||||| ||| |||| || | ||| || Sbjct 10499335 GTATTCAAGCGAAAAATGGTCTGGAAAGTTATGCTTTTA 10499373 >seq1 Length=3447954 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 839378 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 839437 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||| ||||| ||||| Sbjct 839438 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 839497 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 839498 CAGCGGCTTATTTTTGCTGGTA 839519 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 888804 ATGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 888863 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| ||||||||| || || |||||||| ||||| ||||| Sbjct 888864 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 888923 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 888924 CAGCGGCTTATTTTTGCTGGTA 888945 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 814432 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 814491 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| ||||||||| || || |||||||| ||||| ||||| Sbjct 814492 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 814551 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 814552 CAGCGGCTTATTTTTGCTGGTA 814573 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 849569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 849628 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| ||||||||| || || |||||||| ||||| ||||| Sbjct 849629 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 849688 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 849689 CAGCGGCTTATTTTTGCTGGTA 849710 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || ||||| || ||||||||||||||||| || || || ||||| | || Sbjct 863305 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 863364 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| ||||| || | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 863365 AGACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 863424 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 863425 GCAAAGATTAATCTTTGCAGGTAA 863448 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||||||||||||||| || || | || || || | || Sbjct 850202 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 850261 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 850262 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 850321 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 850322 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 850351 Score = 127 bits (140), Expect = 3e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 863987 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 864046 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || ||| | ||| || |||||||| || |||||||||||||| |||| Sbjct 864047 CTGATACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATC 864106 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 864107 AGCAACGATTGATATTTGCTGGTAA 864131 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || ||||| ||||| || || || || || ||| | ||| Sbjct 849237 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 849296 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 849297 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 849356 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 849357 CAACGTCTGATTTTTGCTGGTAA 849379 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || ||||| ||||| || || || || || ||| | ||| Sbjct 888472 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 888531 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 888532 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 888591 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 888592 CAACGTCTGATTTTTGCTGGTAA 888614 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||||||||||||||| || || | || || || | || Sbjct 889437 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 889496 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 889497 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 889556 Query 171982 CAACGACTTATTTTTGCTGGTAAACAG 172008 || || | |||||||||||||| ||| Sbjct 889557 CAGCGTTTGATTTTTGCTGGTAAGCAG 889583 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 793308 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATCT 793367 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || | || || | |||| |||||||||||||| || || ||||| ||||||||| Sbjct 793368 GATACTGTTGAGAATGTAAAAGGGAAGATTCAAGATAAAGAGGGAATTCCTCCCGATCAG 793427 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 793428 CAACGTCTGATTTTTGCTGGTA 793449 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 816406 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 816465 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 816466 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 816525 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 816526 CAACGTCTGATTTTTGCTGGTA 816547 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| || || ||||| |||||| | || || || | || Sbjct 840011 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTAGAACCATCT 840070 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||| || || |||||||| |||||| Sbjct 840071 GATACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCGGATCAG 840130 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 840131 CAACGTCTGATTTTTGCTGGTA 840152 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| || || ||||| |||||| | || || || | || Sbjct 786941 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 787000 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 787001 GATACCATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 787060 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 787061 CAACGTTTGATTTTTGCTGGTAA 787083 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || ||||| ||||| || || || || || || | ||| Sbjct 814100 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 814159 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| |||| || || | |||| || ||||| ||||| || || ||||||||||||||| Sbjct 814160 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAG 814219 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || || |||||||| ||||| Sbjct 814220 CAGCGTCTGATTTTTGCCGGTAA 814242 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || ||||| ||||| || || || || || || | ||| Sbjct 839046 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 839105 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| |||| || || | |||| || ||||| ||||| || || |||||||||||||| Sbjct 839106 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 839165 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || || |||||||||||||| Sbjct 839166 CAGCGTCTGATTTTTGCTGGTAA 839188 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 758557 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATCT 758616 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || | || || | |||| |||||||||||||| || || ||||| || |||||| Sbjct 758617 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAAGAGGGAATTCCTCCTGATCAG 758676 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 758677 CAACGTCTGATTTTTGCTGGTA 758698 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || |||||||| || ||||| |||||| | || || || | || Sbjct 787219 ATGCAAATTTTTGTTAAGACCCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 787278 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | || | ||| || || ||||||||||| ||||| || ||||| Sbjct 787279 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCGCCAGATCAA 787338 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | ||||||||||||| Sbjct 787339 CAACGTTTGATTTTTGCTGGTA 787360 Score = 113 bits (124), Expect = 6e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 798548 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 798607 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||| Sbjct 798608 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 798667 Query 171982 CAACGACTTATTTTTGCTGG 172001 ||||| | ||||| ||||| Sbjct 798668 CAACGTTTGATTTTAGCTGG 798687 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 793020 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 793079 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | || | ||| || || ||||||||||| |||||||| ||||| Sbjct 793080 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 793139 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | || ||||||||||| Sbjct 793140 CAACGTTTGATATTTGCTGGTAA 793162 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || || || || ||||| |||||| | || || || | || Sbjct 786651 ATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 786710 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | || | ||| || || ||||||||||| ||||| || ||||| Sbjct 786711 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCGCCAGATCAA 786770 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | ||||||||||||| Sbjct 786771 CAACGTTTGATTTTTGCTGGTA 786792 Score = 96.9 bits (106), Expect = 5e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 171891 AAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGAT 171950 |||||| |||||| | || || || | || || ||||| || || | |||| ||| || Sbjct 792766 AAAAACGATCACCTTGGAAGTAGAACCATCTGATACAATAGAAAATGTGAAAGGCAAAAT 792825 Query 171951 TCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 ||||||||| || || |||||||| ||||| ||||| | |||||||||||||| ||| Sbjct 792826 TCAAGATAAAGAGGGAATTCCACCGGATCAACAACGTTTGATTTTTGCTGGTAAGCAG 792883 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||||| | | | ||||| | | || | | || Sbjct 816122 ATGCAAATTTTTGTTAAGACTCTTACTGACAGATCAATCACTTTGTAAGTACACCCATCT 816181 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || |||| || || |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 816182 GATTCAATAGAAAATGAGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 816241 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | ||||||||||||| Sbjct 816242 CAACGTTTGATTTTTGCTGGTA 816263 >seq4763 Length=1852 Score = 132 bits (146), Expect = 6e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||||||||| ||||| | ||||| ||| | || Sbjct 1761 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCG 1702 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | ||| || |||||||| || |||||||||||||| |||||| Sbjct 1701 GACACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 1642 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 |||||| | || ||||||||||| Sbjct 1641 CAACGATTGATATTTGCTGGTAA 1619 >seq3435 Length=827 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || |||||||| | ||||||||||| ||||| | ||||| ||| | ||| Sbjct 585 ATGCAGATTTTCGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCA 526 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||| || ||||||||||||||||||||||| || |||||| Sbjct 525 GACACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 466 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || |||||||||| Sbjct 465 CAACGATTGATATTTGCTGGTA 444 >seq3072 Length=446 Score = 125 bits (138), Expect = 9e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 94 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 153 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | ||| || ||||||||||||||||||||||| || |||| Sbjct 154 CTGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 213 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||||||| | || |||||||||| Sbjct 214 AGCAACGATTGATATTTGCTGGTA 237 >seq2 Length=11347909 Score = 125 bits (138), Expect = 9e-24 Identities = 319/484 (66%), Gaps = 6/484 (1%) Strand=Plus/Minus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| || | | |||| |||||| || ||||| | ||||| || || || || | Sbjct 3746509 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGAA 3746450 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 || || ||||| || || ||||| || || ||||| | || || ||||| | Sbjct 3746449 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 3746390 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || ||| ||||| || || ||||| |||||| | | |||| Sbjct 3746389 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGACGCAAAGCGTATGGTCGGTC 3746330 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | |||||||||| | |||| ||| || ||| | | || || ||| Sbjct 3746329 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTAGTT- 3746271 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629 | | || || | || | || || |||||| |||||| || Sbjct 3746270 --GAAAAATCGAGCAAACCGAACGTTCAGCTTACTGTTAGCGGTGAAAAGAAATTGTTCA 3746213 Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||||||||||||||| ||||||| ||| | || ||||| || | ||| ||| ||| Sbjct 3746212 CTCCCGAAGAAATTTCAGCTATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATT 3746153 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 |||| ||| |||||| |||| || || || || || ||||| |||| ||| | |||| Sbjct 3746152 TGGGCAAAGAAGTGAAAAATGCTGTCGTCACGGTTCCCGCTTATTTCAACGATGCGCAAC 3746093 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809 | || || || || || || | | ||||| ||||| || | || |||| ||||| | Sbjct 3746092 GTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACG 3746033 Query 195810 AACC 195813 |||| Sbjct 3746032 AACC 3746029 Score = 105 bits (116), Expect = 9e-18 Identities = 327/502 (65%), Gaps = 8/502 (2%) Strand=Plus/Minus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| || || ||||| || || || ||||| || || ||||||| || | || ||| Sbjct 3745284 ATCAATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 3745225 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 | || | | | || |||||| |||| | || || || | | |||| Sbjct 3745224 GAAGAAGACACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 3745171 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 ||||||| | || || || ||||| || | ||| ||||| || | ||||| Sbjct 3745170 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 3745111 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 ||||| || | || || | |||| ||||| || || ||||||||| Sbjct 3745110 AAGAAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACGGTCACTATTCAAGTT 3745051 Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671 | ||||| ||||| || || | || || |||||||| ||||| | |||||| |||| Sbjct 3745050 TTCGAAGGCGAACGA-CCAATGACCAAAGACAACCATCTTCTTGGGAAATTCGATCTGAC 3744992 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || || | || || ||||| ||| | ||| |||||||| |||| Sbjct 3744991 CGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGT 3744932 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791 || || ||| | ||||||| || || ||||| | | | ||||| | ||||| Sbjct 3744931 GAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCAC 3744872 Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 |||||||||||| | || || || ||| || ||||| || ||| | | ||||| Sbjct 3744871 CATTACCAATGACCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATGC 3744812 Query 196852 GGAAAAGTACAGGGAAGAAGAC 196873 ||||| || |||||| ||| Sbjct 3744811 CGAAAAATATGCGGAAGAGGAC 3744790 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/160 (72%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||||||||| || ||||| ||||| || ||| ||| |||||| | || Sbjct 3745976 AACTGCTGCTGCAATTGCATACGGTCTAGACAAAAAGGAGGGTGAA---AAAAATATTTT 3745920 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| || ||||| ||||| || || | | || | |||||| |||| | Sbjct 3745919 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGACAATGGTGT 3745860 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 |||||||| | ||||| ||||||||||||| | ||| Sbjct 3745859 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 3745820 >seq3296 Length=842 Score = 123 bits (136), Expect = 3e-23 Identities = 132/173 (76%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 171832 TTTAAGAAATAAATGTAATATACTAGTAGTATGCAAATCTTTGTGAAAACCCTTACTGGA 171891 |||||||| | | |||| || | || ||||| || || ||||| || ||||||||| Sbjct 578 TTTAAGAATTTGCT-TAATTTATTCATATTATGCTTATATTCGTGAAGACACTTACTGGA 520 Query 171892 AAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATT 171951 |||||||| || || || ||||| | |||||||| ||||| || | ||| || ||| Sbjct 519 AAAACTATAACACTAGAAGTTGAACCATCAGACACCATCGAGAATGTTAAAAGTAAAATT 460 Query 171952 CAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAA 172004 || ||||||||||||||||| || ||||||||| || | | ||||| ||||| Sbjct 459 CAGGATAAGGAAGGCATTCCTCCTGATCAGCAAAGATTAGTCTTTGCAGGTAA 407 >seq3791 Length=500 Score = 105 bits (116), Expect = 9e-18 Identities = 110/143 (77%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTT-TGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 ||||||| || ||| || || ||||| || ||||| ||||| | || || ||| | || Sbjct 433 ATGCAAAATTTGTGTTAAGACTCTTACCGGCAAAACGATCACACAAGAAGTAGAGCCATC 374 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 373 TGATACAATAGAGAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 314 Query 171981 GCAACGACTTATTTTTGCTGGTA 172003 |||||| | ||||||||||||| Sbjct 313 GCAACGTGTGATTTTTGCTGGTA 291 >seq5152 Length=332 Score = 102 bits (112), Expect = 1e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||| | || | |||| |||||| | || || || | || Sbjct 327 ATGCAAATTTTTGTTAAGACCTTCACGGCAAAAG--ATCACCTTGGAAGTAGAACCATCT 270 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 269 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 210 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 209 CAACGTTTGATTTTTGCTGGTAA 187 >seq4234 Length=1659 Score = 100 bits (110), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 992 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 933 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | | |||||||| |||| ||||| Sbjct 932 TACTTTGTCCGATTACAATATTCAGAAAGG 903 >seq5 Length=5663831 Score = 100 bits (110), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 476852 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 476793 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | | |||||||| |||| ||||| Sbjct 476792 TACTTTGTCCGATTACAATATTCAGAAAGG 476763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657805963629360