Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 2e-22
seq3296 107 3e-18
>seq1
Length=3447954
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | ||||||||| || || || |||||||| || || || ||| ||
Sbjct 888943 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 888884
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| |||| ||| ||||| || | ||||||||| || || || ||||| ||||| | |
Sbjct 888883 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 888824
Query 193341 GTTTTTACAAATATTTGCAT 193360
||||| ||||||||||||||
Sbjct 888823 GTTTTCACAAATATTTGCAT 888804
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270
||| || || || |||||||| || | ||||||||| || || ||||| |||||||||||
Sbjct 889586 TAACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 889527
Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330
|||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 889526 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 889467
Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||
Sbjct 889466 TCCAGTAAGGGTCTTAACAAAAATTTGCATT 889436
Score = 111 bits (122), Expect = 3e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || ||||| |||||||| || ||||||||||| || ||||| ||||| || |||||
Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 863389
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
|||| | ||| || || || || | ||||||||||| ||||||||||| || ||
Sbjct 863388 CTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 863329
Query 193338 AGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376
|| || || || ||||| ||||| | | | |||| |||
Sbjct 863328 AGTGTCTTCACGAATATCTGCATAATTTGAATAAATTAA 863290
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|| || || || |||||||| || | |||||||| || || ||||| |||||||||||
Sbjct 850350 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 850291
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|||||| ||| | |||| || ||||| || | || ||||| | |||||| |||||
Sbjct 850290 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 850231
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || ||||| |||||||||
Sbjct 850230 CCAGTAAGGGTCTTAACAAAAATTTGCATT 850201
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| ||||||||||| | | ||| ||||| || || ||||| |||||||| || |||||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
||| | |||| ||| | || || | || ||||| ||||| || ||||| || ||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 193338 AGCGTTTTTACAAATATTTGCATTTT 193363
|| ||||| |||||||| ||||||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCATTTT 814097
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || |||||||| || | |||||||| || || ||||| ||||||||||| ||||||
Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
||| | |||| || ||||| || | || ||||| | || || ||||| || ||
Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964
Query 193338 AGCGTTTTTACAAATATTTGCATT 193361
|| || || ||||| |||||||||
Sbjct 786963 AGGGTCTTAACAAAAATTTGCATT 786940
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 193220 TCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGT 193279
||| || ||||| || | |||||||| || || ||||||||||||||||| ||||||
Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629
Query 193280 TTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339
||| | |||| || ||||| || | || ||||| | || || ||||| || || ||
Sbjct 798628 TTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 798569
Query 193340 CGTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||
Sbjct 798568 AGTCTTAACAAAAATTTGCATT 798547
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||||||||| ||||| ||||||||||| || || |
Sbjct 758696 CCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 758637
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | ||| || |||||| || | || ||||| | || || ||||| || |||||
Sbjct 758636 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 758577
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||
Sbjct 758576 GTCTTAACAAAAATTTGCATT 758556
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| ||||| ||||| ||||||||||| || || |
Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| || |||||| || | || ||||| | || || ||||| || |||||
Sbjct 793387 TTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 793328
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||
Sbjct 793327 GTCTTAACAAAAATTTGCATT 793307
>seq3296
Length=842
Score = 107 bits (118), Expect = 3e-18
Identities = 119/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || ||||| | |||||| || ||||||||||| || ||||| ||||| || |||||
Sbjct 407 TTACCTGCAAAGACTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 466
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
|||| | ||| || || || || | ||||||||||| ||||||||||| || ||
Sbjct 467 CTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 526
Query 193338 AGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376
|| || || || ||||| |||| ||| | |||| |||
Sbjct 527 AGTGTCTTCACGAATATAAGCATAATATGAATAAATTAA 565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899577220898160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |