Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 3e-24
seq3072 122 1e-22
seq4763 120 4e-22
seq3435 109 8e-19
seq3296 96.9 5e-15
seq5152 91.5 2e-13
>seq1
Length=3447954
Score = 127 bits (140), Expect = 3e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || |||
Sbjct 863989 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 864048
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||||||||||| |||||| ||||| ||||||||||| || || || ||
Sbjct 864049 GATACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 864108
Query 155943 CAAAGATTGATTTATGCCGGTAA 155965
||| ||||||| | ||| |||||
Sbjct 864109 CAACGATTGATATTTGCTGGTAA 864131
Score = 114 bits (126), Expect = 2e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 850201 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 850260
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 850261 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 850320
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 850321 ACAACGTTTGATTTTTGCTGGTAAGCAG 850348
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 889436 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 889495
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 889496 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 889555
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
||| | ||||||| ||| |||||||||
Sbjct 889556 ACAGCGTTTGATTTTTGCTGGTAAGCAG 889583
Score = 102 bits (112), Expect = 1e-16
Identities = 118/158 (75%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867
||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| ||
Sbjct 863292 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 863350
Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927
||||| ||| || || | || || || |||| |||||| || ||||| ||||||
Sbjct 863351 GAAGTTGAACCATCAGACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 863410
Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965
|| ||||| || || |||||||| || | ||| |||||
Sbjct 863411 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAA 863448
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 839378 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 839437
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || ||||| |||
Sbjct 839438 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 839497
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 839498 CAGCGGCTTATTTTTGCTGGTATGC 839522
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 888804 ATGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 888863
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || || || ||||||||||| || ||||| |||
Sbjct 888864 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 888923
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 888924 CAGCGGCTTATTTTTGCTGGTATGC 888948
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || || ||||| ||| ||
Sbjct 786940 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 786999
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 787000 TGATACCATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 787059
Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965
|||| | ||||||| ||| |||||
Sbjct 787060 ACAACGTTTGATTTTTGCTGGTAA 787083
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 814432 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 814491
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || || || ||||||||||| || ||||| |||
Sbjct 814492 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 814551
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 814552 CAGCGGCTTATTTTTGCTGGTATGC 814576
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 849569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 849628
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || || || ||||||||||| || ||||| |||
Sbjct 849629 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 849688
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 849689 CAGCGGCTTATTTTTGCTGGTATGC 849713
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | || || ||||| || || || ||||| ||| ||
Sbjct 798547 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATC 798606
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| |||||||||||||| || || || || ||
Sbjct 798607 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 798666
Query 155942 ACAAAGATTGATTT 155955
|||| | |||||||
Sbjct 798667 ACAACGTTTGATTT 798680
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||| ||||| || || || ||||| ||| ||
Sbjct 758556 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 758615
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| | || || |||||| || || ||||||||||| || || ||||| || ||
Sbjct 758616 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAAGAGGGAATTCCTCCTGATCA 758675
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 758676 GCAACGTCTGATTTTTGCTGGTA 758698
Score = 87.8 bits (96), Expect = 3e-12
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 155852 AAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAAT 155911
|||||| || || || ||||| ||| ||||||| || ||| |||||| |||||
Sbjct 792766 AAAAACGATCACCTTGGAAGTAGAACCATCTGATACAATAGAAAATGTGAAAGGCAAAAT 792825
Query 155912 ACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969
||||||||||| || || || || || |||||| | ||||||| ||| |||||||||
Sbjct 792826 TCAAGATAAAGAGGGAATTCCACCGGATCAACAACGTTTGATTTTTGCTGGTAAGCAG 792883
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||| ||||| || || || ||||| ||| ||
Sbjct 793307 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 793366
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| | || || || ||| || || ||||||||||| || || ||||| || ||
Sbjct 793367 TGATACTGTTGAGAATGTAAAAGGGAAGATTCAAGATAAAGAGGGAATTCCTCCCGATCA 793426
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 793427 GCAACGTCTGATTTTTGCTGGTA 793449
>seq3072
Length=446
Score = 122 bits (134), Expect = 1e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || |||
Sbjct 96 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 155
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 156 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 215
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 216 CAACGATTGATATTTGCTGGTA 237
>seq4763
Length=1852
Score = 120 bits (132), Expect = 4e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | |||||||| ||||||||||| || ||||| || || || |||
Sbjct 1762 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTC 1703
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| ||||||||||| |||||| ||||| ||||||||||| || || || ||
Sbjct 1702 GGACACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCA 1643
Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965
||| ||||||| | ||| |||||
Sbjct 1642 GCAACGATTGATATTTGCTGGTAA 1619
>seq3435
Length=827
Score = 109 bits (120), Expect = 8e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | |||||||| ||||||||||| || ||||| || || || |||
Sbjct 586 AATGCAGATTTTCGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTC 527
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 526 AGACACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCA 467
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 466 GCAACGATTGATATTTGCTGGTA 444
>seq3296
Length=842
Score = 96.9 bits (106), Expect = 5e-15
Identities = 117/158 (74%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867
||||||| | ||| |||| ||||| | || ||| | |||||||||||||| ||| ||
Sbjct 563 AATTTAT-TCATATTATGCTTATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 505
Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927
||||| ||| || || | || || || |||| |||||| || ||||| ||||||
Sbjct 504 GAAGTTGAACCATCAGACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 445
Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965
|| ||||| || || |||||||| | | ||| |||||
Sbjct 444 ATTCCTCCTGATCAGCAAAGATTAGTCTTTGCAGGTAA 407
>seq5152
Length=332
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || || || | |||| || || || ||||| ||| ||
Sbjct 328 AATGCAAATTTTTGTTAAGACCTTCACGGCAAAAG--ATCACCTTGGAAGTAGAACCATC 271
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 270 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 211
Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965
|||| | ||||||| ||| |||||
Sbjct 210 ACAACGTTTGATTTTTGCTGGTAA 187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731809214530800
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