Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 132 9e-26 seq3072 116 7e-21 seq4763 111 3e-19 seq3435 109 1e-18 seq5152 95.1 2e-14 >seq1 Length=3447954 Score = 132 bits (146), Expect = 9e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | ||||||||| ||||| ||||| |||||||| || |||||| Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| || || ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| ||||| || | | ||| ||||| ||||| ||||| |||||||| || |||||| Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| || || ||||| | ||| ||||| |||||||||||||| ||||| Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 814122 AGAGTTTTGACAAATATCTGCATTTT 814097 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||||||||| || |||||||| || || ||||| ||||| || |||||| Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 863389 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| ||||| || | ||||| | ||| |||||||| || || ||||| ||||| Sbjct 863388 CTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 863329 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||| || | ||||||||||| Sbjct 863328 AGTGTCTTCACGAATATCTGCAT 863306 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || |||| || ||||||||||| || |||||||| ||||| |||||| Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| || || || | ||| || | |||||||| | || || ||||| |||||| Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 864012 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 |||||||| | ||| |||||||| Sbjct 864011 AATGTTTTCACAAAAATCTGCAT 863989 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | ||||||||| ||||| ||||| ||||||||||| Sbjct 889585 AACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 889526 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 889525 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 889466 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| ||| || |||||| Sbjct 889465 CCAGTAAGGGTCTTAACAAAAATTTGCATT 889436 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| ||||| || |||||||| ||||| || || Sbjct 839519 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 839460 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | |||||||| || ||||| || ||||| ||||| || || | Sbjct 839459 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 839400 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 839399 ACGTTTTCACAAATATCTGCAT 839378 Score = 113 bits (124), Expect = 9e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| ||||| || |||||||| || || || || Sbjct 814573 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 814514 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | |||||||| || ||||| || ||||| ||||| || || | Sbjct 814513 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 814454 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 814453 ACGTTTTCACAAATATCTGCAT 814432 Score = 113 bits (124), Expect = 9e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| ||||| || |||||||| || || || || Sbjct 849710 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 849651 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | |||||||| || ||||| || ||||| ||||| || || | Sbjct 849650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 849591 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 849590 ACGTTTTCACAAATATCTGCAT 849569 Score = 113 bits (124), Expect = 9e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 850350 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 850291 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 850290 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 850231 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| ||| || |||||| Sbjct 850230 CCAGTAAGGGTCTTAACAAAAATTTGCATT 850201 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | |||||||| ||||| ||||| |||||||| || |||||| Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||||| | || ||||| || ||||||||||| ||||| Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTT 849234 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | |||||||| ||||| ||||| |||||||| || |||||| Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||||| | || ||||| || ||||||||||| ||||| Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTT 888469 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| ||||| Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| ||| | ||| || | ||||||||| | || || ||||| || || Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | || |||| ||| || |||||| Sbjct 786963 AGGGTCTTAACAAAAATTTGCATT 786940 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| || Sbjct 793169 CAATTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 793110 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 |||||| |||||||| ||| | ||| || | ||| ||||| | || || ||||| Sbjct 793109 TATTTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTT 793050 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || |||| ||| || |||||| Sbjct 793049 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 793019 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192397 CCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 192456 ||||| || || || | |||||||| ||||| ||||||||||||||||| ||||| | Sbjct 798687 CCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 798628 Query 192457 TTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAAT 192516 || ||||| ||| | ||| || | ||| ||||| | || || ||||| || || | Sbjct 798627 TTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 798568 Query 192517 GTTTTAATAAATATCTGCATT 192537 || |||| ||| || |||||| Sbjct 798567 GTCTTAACAAAAATTTGCATT 798547 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || |||||||| || ||||| ||||||||||| || || Sbjct 758698 TACCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCC 758639 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| | || ||| || | ||| ||||| | || |||||||| ||||||| Sbjct 758638 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 758579 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| ||| || |||||| Sbjct 758578 GGGTCTTAACAAAAATTTGCATT 758556 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| || || ||||| ||||||||||| || || Sbjct 793449 TACCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCC 793390 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| | || ||| || | ||| ||||| | || |||||||| ||||||| Sbjct 793389 CTTTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 793330 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| ||| || |||||| Sbjct 793329 GGGTCTTAACAAAAATTTGCATT 793307 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 792885 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 792826 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||||| ||| ||||| ||| | ||| || | ||||||||| | || || ||||| Sbjct 792825 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 792767 >seq3072 Length=446 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || |||||||| || || ||||| |||||||| |||||| Sbjct 237 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 178 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| ||||| || | ||| || | |||||||| | || || ||||| ||||||| Sbjct 177 TTTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 118 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||||| | ||| |||||||| Sbjct 117 ATGTTTTCACAAAAATCTGCAT 96 >seq4763 Length=1852 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || |||| || ||||||||||| || |||||||| ||||| |||||| Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 1678 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| || || || | || || | ||||| || | || || ||||| |||||| Sbjct 1679 CTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 1738 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 |||||||| | ||| ||||||||| Sbjct 1739 AATGTTTTCACAAAAATCTGCATT 1762 >seq3435 Length=827 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || |||||||| || || ||||| |||||||| |||||| Sbjct 444 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 503 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| ||||| || | ||||| | ||||| || | || || ||||| ||||||| Sbjct 504 TTTTCACATTTTCAATCGTGTCTGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTA 563 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 ||||||| | || ||||||||| Sbjct 564 ATGTTTTCACGAAAATCTGCATT 586 >seq5152 Length=332 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| ||||| Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| ||| | ||| || | ||||||||| | || || |||| || || Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGAT-CTTTTGCC-GTG 304 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 || || |||| ||| || |||||| Sbjct 305 AAGGTCTTAACAAAAATTTGCATT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984393432520050