Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 5e-23
seq3435 114 2e-20
seq3072 113 8e-20
seq4763 107 3e-18
seq5152 95.1 2e-14
seq3791 84.2 4e-11
>seq1
Length=3447954
Score = 123 bits (136), Expect = 5e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | |||||| || ||||| ||||| |||||||| || ||||||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| || | ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| ||||| |||||||| || || ||||| || || ||||| ||||| || ||||||
Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 863389
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| ||||| || || ||||| | ||| |||||||| || || ||||| |||||
Sbjct 863388 CTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 863329
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| ||| || | ||||||||||||
Sbjct 863328 AGTGTCTTCACGAATATCTGCAT 863306
Score = 118 bits (130), Expect = 2e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | |||||| || ||||| ||||| |||||||||||
Sbjct 889585 AACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 889526
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 889525 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 889466
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 889465 CCAGTAAGGGTCTTAACAAAAATTTGCATT 889436
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| ||||| || ||
Sbjct 839519 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 839460
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 839459 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 839400
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 839399 ACGTTTTCACAAATATCTGCAT 839378
Score = 114 bits (126), Expect = 2e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| |||||||| | | ||| || || ||||| ||||| |||||||| || ||||||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| || | ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCATTTT 814097
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || |||| || || |||||||| || |||||||| ||||| ||||||
Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| || || || ||||| || | |||||||| | || || ||||| ||||||
Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 864012
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|||||||| | || ||||||||
Sbjct 864011 AATGTTTTCACAAAAATCTGCAT 863989
Score = 113 bits (124), Expect = 8e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| || || || ||
Sbjct 814573 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 814514
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 814513 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 814454
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 814453 ACGTTTTCACAAATATCTGCAT 814432
Score = 113 bits (124), Expect = 8e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| || || || ||
Sbjct 849710 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 849651
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 849650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 849591
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | |||||||||||
Sbjct 849590 ACGTTTTCACAAATATCTGCAT 849569
Score = 113 bits (124), Expect = 8e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| ||||| |||||||||||
Sbjct 850350 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 850291
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || |||||
Sbjct 850290 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 850231
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| || || ||||||
Sbjct 850230 CCAGTAAGGGTCTTAACAAAAATTTGCATT 850201
Score = 111 bits (122), Expect = 3e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | || ||||| || ||||||||||| |||||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTT 849234
Score = 111 bits (122), Expect = 3e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| | | ||||| || ||||| ||||| |||||||| || ||||||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | || ||||| || ||||||||||| |||||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTT 888469
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || ||||| || |||||||| || || || ||
Sbjct 888945 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 888886
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||||| || |||||||||| || ||||| || ||||| ||||| || || |
Sbjct 888885 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 888826
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | ||||| |||||
Sbjct 888825 ACGTTTTCACAAATATTTGCAT 888804
Score = 102 bits (112), Expect = 1e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| || | ||||| || ||||| ||||| ||||||||||| |||||
Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| ||| ||||| || | ||||||||| | || || ||||| || ||
Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964
Query 172047 AATGTTTTAATGAATATCTGCATT 172070
| || |||| || || ||||||
Sbjct 786963 AGGGTCTTAACAAAAATTTGCATT 786940
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| || | ||||| || || || |||||||| ||||| ||||||||
Sbjct 786792 TACCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGC 786733
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 786732 CCTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGA 786673
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 786672 GAGTCTTAACAAAAATTTGCATT 786650
Score = 96.9 bits (106), Expect = 6e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979
||||| ||||||||||| || || | ||||| || ||||| |||||||| ||||| ||
Sbjct 793169 CAATTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 793110
Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
|||||| |||||||| ||| ||||| || | ||| ||||| | || || |||||
Sbjct 793109 TATTTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTT 793050
Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || | || |||| || || ||||||
Sbjct 793049 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 793019
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || ||||| ||||| |||||||| ||||||||
Sbjct 840152 TACCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGC 840093
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| ||| ||||| || | ||||||||| | || |||||||| || || |
Sbjct 840092 CTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGA 840033
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 840032 GGGTCTTAACAAAAATTTGCATT 840010
Score = 93.3 bits (102), Expect = 8e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
|| || |||||||||||||| || | ||||| || ||||| ||||| |||||||||||
Sbjct 792885 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 792826
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039
||||| ||| ||||| ||| ||||| || | ||||||||| | || || |||||
Sbjct 792825 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 792767
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 171930 CCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 171989
||||| ||||| || | ||||| || ||||| ||||||||||||||||| ||||| |
Sbjct 798687 CCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 798628
Query 171990 TTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAAT 172049
|| ||||| ||| ||||| || | ||| ||||| | || || ||||| || || |
Sbjct 798627 TTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 798568
Query 172050 GTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 798567 GTCTTAACAAAAATTTGCATT 798547
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || ||||| || ||||| ||||||||||| || ||
Sbjct 758698 TACCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCC 758639
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| | |||||| || | ||| ||||| | || |||||||| |||||||
Sbjct 758638 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 758579
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 758578 GGGTCTTAACAAAAATTTGCATT 758556
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| || | ||||| || || || |||||||| ||||| ||||||||
Sbjct 787360 TACCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGC 787301
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||| ||| ||||| || | ||| ||||| | || || ||||| || || |
Sbjct 787300 CCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAA 787241
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 787240 GGGTCTTAACAAAAATTTGCATT 787218
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | || || || || || ||||| ||||||||||| || ||
Sbjct 793449 TACCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCC 793390
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| | |||||| || | ||| ||||| | || |||||||| |||||||
Sbjct 793389 CTTTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 793330
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 793329 GGGTCTTAACAAAAATTTGCATT 793307
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | ||||| || ||||| |||||||| ||||| ||||||||
Sbjct 816547 TACCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCC 816488
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| || ||||| || | ||| ||||| | || || ||||| || || |
Sbjct 816487 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAA 816428
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| || || ||||||
Sbjct 816427 GAGTCTTAACAAAAATTTGCATT 816405
>seq3435
Length=827
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || ||||| || || ||||| |||||||| ||||||
Sbjct 444 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 503
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||| ||||| || || ||||| | ||||| || | || || ||||| |||||||
Sbjct 504 TTTTCACATTTTCAATCGTGTCTGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTA 563
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
||||||| | ||| |||||||||
Sbjct 564 ATGTTTTCACGAAAATCTGCATT 586
>seq3072
Length=446
Score = 113 bits (124), Expect = 8e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || |||| || || ||||| || || ||||| |||||||| ||||||
Sbjct 237 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 178
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||| ||||| || ||||| || | |||||||| | || || ||||| |||||||
Sbjct 177 TTTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 118
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||||| | || ||||||||
Sbjct 117 ATGTTTTCACAAAAATCTGCAT 96
>seq4763
Length=1852
Score = 107 bits (118), Expect = 3e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || |||| || || |||||||| || |||||||| ||||| ||||||
Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 1678
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| || || || || || || | ||||| || | || || ||||| ||||||
Sbjct 1679 CTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 1738
Query 172047 AATGTTTTAATGAATATCTGCATT 172070
|||||||| | || |||||||||
Sbjct 1739 AATGTTTTCACAAAAATCTGCATT 1762
>seq5152
Length=332
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| || | ||||| || ||||| ||||| ||||||||||| |||||
Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| ||| ||||| || | ||||||||| | || || |||| || ||
Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGAT-CTTTTGCC-GTG 304
Query 172047 AATGTTTTAATGAATATCTGCATT 172070
|| || |||| || || ||||||
Sbjct 305 AAGGTCTTAACAAAAATTTGCATT 328
>seq3791
Length=500
Score = 84.2 bits (92), Expect = 4e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
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Sbjct 291 TACCAGCAAAAATCACACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCC 350
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| ||| ||||| || | ||||||||| | || || ||||| || || |
Sbjct 351 CTTTCACATTCTCTATTGTATCAGATGGCTCTACTTCTTGTGTGATCGTTTTGCCGGTAA 410
Query 172048 ATGTTTTAA 172056
|| ||||
Sbjct 411 GAGTCTTAA 419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905058350645400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |