Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 87.8 5e-12 >seq9 Length=7553686 Score = 87.8 bits (96), Expect = 5e-12 Identities = 165/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || ||||| || || ||||| |||||||| | ||||| ||||| | || Sbjct 3040746 ACCAGTTTCAGCGGTTTTAACCGCAGTATCGATTAGACCTTCTCGACCGCCCATTGTGTG 3040805 Query 302667 GAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGC 302724 |||||| | || |||| || |||| |||| | || | | ||||||||||| || Sbjct 3040806 GAAGAAAAATTCAGACGGT-GTCAAGCCGGCCAA-ATAGCTGTTTTCAACGAAACCCCGA 3040863 Query 302725 GCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784 |||||| | |||| ||| | || || |||| || | | ||||| | Sbjct 3040864 CTCTCGGGTCCGTAGTCGTCTTTGATGAAATGAGGCAACGTGCGATGGCGGAAGCCGAAC 3040923 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| ||||| || || ||||||||||| || | ||| | |||| |||||||| || Sbjct 3040924 GGGATGCGCTTGCCTTCGACGTTCTGCTGCCCAACGCAGGCTATCACTTGCGAAATGTT 3040982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471688179858831