Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq3435 111 2e-19
seq4763 107 3e-18
seq1 107 3e-18
seq3072 105 1e-17
seq3296 84.2 3e-11
>seq3435
Length=827
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||||||||| ||||||||||| || | || ||||| | | |
Sbjct 584 TGCAGATTTTCGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCAG 525
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| |||| |||||| ||| ||| ||||||||||| || ||||| |
Sbjct 524 ACACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 465
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
|| || | || ||||| ||||
Sbjct 464 AACGATTGATATTTGCTGGTA 444
>seq4763
Length=1852
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||||||||| ||||||||||| || | || ||||| | | |
Sbjct 1760 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCGG 1701
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| |||| || |||| |||||| ||| ||||||||||||||||| ||||| |
Sbjct 1700 ACACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAGC 1641
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| || | || ||||| |||||
Sbjct 1640 AACGATTGATATTTGCTGGTAA 1619
>seq1
Length=3447954
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||||||||| ||||||||||| || | || ||||| | |
Sbjct 863990 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 864049
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||| || |||| |||||| ||| ||||||||||||||||| ||||| |
Sbjct 864050 ATACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAGC 864109
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| || | || ||||| |||||
Sbjct 864110 AACGATTGATATTTGCTGGTAA 864131
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 839379 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 839438
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||| ||||| |||||||
Sbjct 839439 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 839498
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 839499 AGCGGCTTATTTTTGCTGGTA 839519
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||||||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 888805 TGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 888864
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || || ||||||||||| ||||| |||||||
Sbjct 888865 ATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAAC 888924
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 888925 AGCGGCTTATTTTTGCTGGTA 888945
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 814433 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 814492
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || || ||||||||||| ||||| |||||||
Sbjct 814493 ATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAAC 814552
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 814553 AGCGGCTTATTTTTGCTGGTA 814573
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 849570 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 849629
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || || ||||||||||| ||||| |||||||
Sbjct 849630 ATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAAC 849689
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 849690 AGCGGCTTATTTTTGCTGGTA 849710
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 850203 TGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 850262
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 850263 ATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 850322
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||||| || ||
Sbjct 850323 AACGTTTGATTTTTGCTGGTAAGCAGTT 850350
Score = 93.3 bits (102), Expect = 7e-14
Identities = 108/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| |||||| | || ||| | || |||||||| || || | || || |||| || |
Sbjct 863307 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 863365
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || || | ||||| |||| |||||| || ||| ||||||||||| || |||||
Sbjct 863366 GACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 863425
Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173
|||||| | || |||||||||||
Sbjct 863426 CAAAGATTAATCTTTGCAGGTAA 863448
Score = 93.3 bits (102), Expect = 7e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 889438 TGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 889497
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 889498 ATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 889557
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTA 146180
| | | |||||||| ||||| || |||
Sbjct 889558 AGCGTTTGATTTTTGCTGGTAAGCAGTTA 889586
Score = 89.7 bits (98), Expect = 8e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 839047 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 839106
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| | ||| ||||||| ||| |||||| || |||||| || ||||||||||||||||
Sbjct 839107 ACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 839166
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
| | || |||||||| |||||
Sbjct 839167 AGCGTCTGATTTTTGCTGGTAA 839188
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 814101 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 814160
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| | ||| ||||||| ||| |||||| || |||||| || |||||||||||||| |
Sbjct 814161 ACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAGC 814220
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
| | || |||||||| |||||
Sbjct 814221 AGCGTCTGATTTTTGCCGGTAA 814242
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| ||||| | || || || | |
Sbjct 849238 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCAG 849297
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 849298 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 849357
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 849358 AACGTCTGATTTTTGCTGGTAA 849379
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| ||||| | || || || | |
Sbjct 888473 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCAG 888532
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 888533 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 888592
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 888593 AACGTCTGATTTTTGCTGGTAA 888614
>seq3072
Length=446
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||||||||| ||||||||||| || | || ||||| | |
Sbjct 97 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 156
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| |||| |||||| ||| ||| ||||||||||| || ||||| |
Sbjct 157 ATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 216
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
|| || | || ||||| ||||
Sbjct 217 AACGATTGATATTTGCTGGTA 237
>seq3296
Length=842
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAACGATAC 146095
|||||| | || ||| | || |||||||| || || | || || |||| || | || ||
Sbjct 543 ATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA-GACAC 485
Query 146096 TATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAG 146155
|| | ||||| |||| |||||| || ||| ||||||||||| || ||||| |||||
Sbjct 484 CATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAGCAAAG 425
Query 146156 ACTCATTTTTGCAGGTAA 146173
| | | |||||||||||
Sbjct 424 ATTAGTCTTTGCAGGTAA 407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786098956749960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |