Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3435 111 2e-19 seq4763 107 3e-18 seq1 107 3e-18 seq3072 105 1e-17 seq3296 84.2 3e-11 >seq3435 Length=827 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||||||||| ||||||||||| || | || ||||| | | | Sbjct 584 TGCAGATTTTCGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCAG 525 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| |||| |||||| ||| ||| ||||||||||| || ||||| | Sbjct 524 ACACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 465 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || || | || ||||| |||| Sbjct 464 AACGATTGATATTTGCTGGTA 444 >seq4763 Length=1852 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | | Sbjct 1760 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCGG 1701 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || |||| |||||| ||| ||||||||||||||||| ||||| | Sbjct 1700 ACACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAGC 1641 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 1640 AACGATTGATATTTGCTGGTAA 1619 >seq1 Length=3447954 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 863990 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 864049 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || |||| |||||| ||| ||||||||||||||||| ||||| | Sbjct 864050 ATACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAGC 864109 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 864110 AACGATTGATATTTGCTGGTAA 864131 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 839379 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 839438 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || ||| ||||||||||| ||||| ||||||| Sbjct 839439 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 839498 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 839499 AGCGGCTTATTTTTGCTGGTA 839519 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 888805 TGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 888864 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || || ||||||||||| ||||| ||||||| Sbjct 888865 ATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAAC 888924 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 888925 AGCGGCTTATTTTTGCTGGTA 888945 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 814433 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 814492 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || || ||||||||||| ||||| ||||||| Sbjct 814493 ATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAAC 814552 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 814553 AGCGGCTTATTTTTGCTGGTA 814573 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 849570 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 849629 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || || ||||||||||| ||||| ||||||| Sbjct 849630 ATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAAC 849689 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 849690 AGCGGCTTATTTTTGCTGGTA 849710 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||||| | Sbjct 850203 TGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 850262 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||| Sbjct 850263 ATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 850322 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| ||||| || || Sbjct 850323 AACGTTTGATTTTTGCTGGTAAGCAGTT 850350 Score = 93.3 bits (102), Expect = 7e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| |||||| | || ||| | || |||||||| || || | || || |||| || | Sbjct 863307 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 863365 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| |||| |||||| || ||| ||||||||||| || ||||| Sbjct 863366 GACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 863425 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 |||||| | || ||||||||||| Sbjct 863426 CAAAGATTAATCTTTGCAGGTAA 863448 Score = 93.3 bits (102), Expect = 7e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||||| | Sbjct 889438 TGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 889497 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||| Sbjct 889498 ATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 889557 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTA 146180 | | | |||||||| ||||| || ||| Sbjct 889558 AGCGTTTGATTTTTGCTGGTAAGCAGTTA 889586 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 839047 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 839106 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| ||||||| ||| |||||| || |||||| || |||||||||||||||| Sbjct 839107 ACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 839166 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | | || |||||||| ||||| Sbjct 839167 AGCGTCTGATTTTTGCTGGTAA 839188 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 814101 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 814160 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| ||||||| ||| |||||| || |||||| || |||||||||||||| | Sbjct 814161 ACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAGC 814220 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | | || |||||||| ||||| Sbjct 814221 AGCGTCTGATTTTTGCCGGTAA 814242 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| ||||| | || || || | | Sbjct 849238 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCAG 849297 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| || |||||| || |||||||||||||||| Sbjct 849298 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 849357 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | || |||||||| ||||| Sbjct 849358 AACGTCTGATTTTTGCTGGTAA 849379 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| ||||| | || || || | | Sbjct 888473 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCAG 888532 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| || |||||| || |||||||||||||||| Sbjct 888533 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 888592 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | || |||||||| ||||| Sbjct 888593 AACGTCTGATTTTTGCTGGTAA 888614 >seq3072 Length=446 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 97 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 156 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| |||| |||||| ||| ||| ||||||||||| || ||||| | Sbjct 157 ATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 216 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || || | || ||||| |||| Sbjct 217 AACGATTGATATTTGCTGGTA 237 >seq3296 Length=842 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAACGATAC 146095 |||||| | || ||| | || |||||||| || || | || || |||| || | || || Sbjct 543 ATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA-GACAC 485 Query 146096 TATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAG 146155 || | ||||| |||| |||||| || ||| ||||||||||| || ||||| ||||| Sbjct 484 CATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAGCAAAG 425 Query 146156 ACTCATTTTTGCAGGTAA 146173 | | | ||||||||||| Sbjct 424 ATTAGTCTTTGCAGGTAA 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786098956749960