Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq4763 120 2e-22
seq1 118 8e-22
seq3296 82.4 6e-11
>seq4763
Length=1852
Score = 120 bits (132), Expect = 2e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| ||||||||| ||||||||| || ||||| || ||||||||||| | |||
Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 1678
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| || |||| | ||||| ||| | ||||| || | || || ||||| ||||||
Sbjct 1679 CTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 1738
Query 29764 AAGGTTTTAACAAATATCTGCATT 29787
|| ||||| ||||| |||||||||
Sbjct 1739 AATGTTTTCACAAAAATCTGCATT 1762
>seq1
Length=3447954
Score = 118 bits (130), Expect = 8e-22
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| ||||||||| ||||||||| || ||||| || ||||||||||| | |||
Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| || |||| | || ||||| | |||||||| | || || ||||| ||||||
Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 864012
Query 29764 AAGGTTTTAACAAATATCTGCAT 29786
|| ||||| ||||| ||||||||
Sbjct 864011 AATGTTTTCACAAAAATCTGCAT 863989
Score = 114 bits (126), Expect = 1e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | |||| | |||||||||||| ||||| |||||||| || |||| ||| |
Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||||| || ||||| |||||||||| | || || |||||||| || | |
Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031
Query 29767 GTTTTAACAAATATCTGCATT 29787
|| |||||||| || ||||||
Sbjct 840030 GTCTTAACAAAAATTTGCATT 840010
Score = 102 bits (112), Expect = 6e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| || ||| | |||| | |||||||| || ||||| |||||||| || || | |||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| ||| |||| | | ||| || |||| ||||| ||||| || ||||| |||||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCATTTT 814097
Score = 102 bits (112), Expect = 6e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | || ||||| || ||||| |||||||| || || | |||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| ||| |||| | | ||| || |||| ||||| ||||| || ||||| |||||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | ||| ||||| || ||||| |||||||| || || | |||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| ||| |||| | ||||| || | || ||||| || || || ||||| |||||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTT 849234
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| || ||| | || |||||||||||||| || ||||| || || || || || | |||
Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 863389
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| ||| | || | ||||| || |||| ||||| || ||||||||||| |||||
Sbjct 863388 CTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 863329
Query 29764 AAGGTTTTAACAAATATCTGCAT 29786
| || || || |||||||||||
Sbjct 863328 AGTGTCTTCACGAATATCTGCAT 863306
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | ||| ||||| || ||||| |||||||| || || | |||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| ||| |||| | ||||| || | || ||||| || || || ||||| |||||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTT 888469
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | || | | || ||||| || || || || ||||||||||| | || |
Sbjct 839517 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 839458
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || || || | || |||||||| || || ||||| || || ||
Sbjct 839457 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 839398
Query 29767 GTTTTAACAAATATCTGCAT 29786
||||| ||||||||||||||
Sbjct 839397 GTTTTCACAAATATCTGCAT 839378
>seq3296
Length=842
Score = 82.4 bits (90), Expect = 6e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718
|||||||||||||| || ||||| || || || || || | ||| ||| ||| | ||
Sbjct 422 AATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTACTTTTAACATTCTCG 481
Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAAT 29778
| ||||| || |||| ||||| || ||||||||||| ||||| | || || || |||
Sbjct 482 ATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAT 541
Query 29779 ATCTGCAT 29786
|| ||||
Sbjct 542 ATAAGCAT 549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385186979182683
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |