Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq4 345 3e-89
seq2 129 4e-24
>seq4
Length=12041450
Score = 345 bits (382), Expect = 3e-89
Identities = 497/701 (71%), Gaps = 0/701 (0%)
Strand=Plus/Minus
Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 10498239 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 10498180
Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 10498179 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 10498120
Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 10498119 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 10498060
Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 10498059 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 10498000
Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 10497999 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 10497940
Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539
| |||||| | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 10497939 CAGTTTTTCCCAAATAAGCCTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 10497880
Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599
||| |||||| | | || ||| || || || ||| |||| || | |||||
Sbjct 10497879 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 10497820
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659
||| | || |||||||| |||||||||| ||||||||| || || || ||||
Sbjct 10497819 ATCCATCGTTGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 10497760
Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 10497759 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 10497700
Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779
|||||| ||| || |||||||||||||| | || || || || || | |||||| ||
Sbjct 10497699 CTTGATTTTTTGCCGCATCTCCAATCAGTCGCTCGGTATCGGTGAAAGCAACATAACTTG 10497640
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 10497639 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 10497580
Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
| |||||||| | || || || |||||||| |||||||||
Sbjct 10497579 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 10497539
Score = 118 bits (130), Expect = 8e-21
Identities = 197/282 (70%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 10498708 ATACCTGCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCA 10498649
Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889
|| ||||||| ||| || || || | || |||||||| |||| ||||| || || ||
Sbjct 10498648 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 10498590
Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949
|||| |||||| | | || ||| || | ||| | ||| | | ||||||| || ||
Sbjct 10498589 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 10498530
Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009
||| | | || | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 10498529 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 10498470
Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051
| | ||||||| |||||| | | ||||| ||||||
Sbjct 10498469 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 10498428
Score = 111 bits (122), Expect = 1e-18
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676
||| | |||||||| ||||||||||| ||| | ||| || | |||| | | ||||||
Sbjct 2510171 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 2510112
Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736
|||||| | | | || ||||||||||||| ||| || || | |||||||| |||
Sbjct 2510111 GTAACTCCTATTCAGCTCTGTGATAAGTATTATGAATTGCATCGCGATGTTTATGAATGG 2510052
Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783
|||||||| |||||||| ||||||| | | | |||||||||||
Sbjct 2510051 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 2510008
>seq2
Length=11347909
Score = 129 bits (142), Expect = 4e-24
Identities = 139/184 (76%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||| || || |||| | |||||||||||||||||| | ||||||||||| || |||
Sbjct 3746029 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 3746088
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487
|| | ||| | |||||| ||||| || ||||| || | || |||| | | ||||||||
Sbjct 3746089 TGACGTTGCGCATCGTTGAAATAAGCGGGAACCGTGACGACAGCATTTTTCACTTCTTTG 3746148
Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 3746149 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATAGCTGAAATTTCTTCG 3746208
Query 282548 GGAG 282551
||||
Sbjct 3746209 GGAG 3746212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740293455703038
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |