Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4 345 3e-89 seq2 129 4e-24 >seq4 Length=12041450 Score = 345 bits (382), Expect = 3e-89 Identities = 497/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 10498239 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 10498180 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 10498179 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 10498120 Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 10498119 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 10498060 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 10498059 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 10498000 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 10497999 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 10497940 Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | |||||| | |||||| || |||| ||||| || ||| | ||| | | Sbjct 10497939 CAGTTTTTCCCAAATAAGCCTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 10497880 Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 ||| |||||| | | || ||| || || || ||| |||| || | ||||| Sbjct 10497879 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 10497820 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 ||| | || |||||||| |||||||||| ||||||||| || || || |||| Sbjct 10497819 ATCCATCGTTGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 10497760 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 10497759 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 10497700 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||||| ||| || |||||||||||||| | || || || || || | |||||| || Sbjct 10497699 CTTGATTTTTTGCCGCATCTCCAATCAGTCGCTCGGTATCGGTGAAAGCAACATAACTTG 10497640 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 10497639 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 10497580 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | |||||||| | || || || |||||||| ||||||||| Sbjct 10497579 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 10497539 Score = 118 bits (130), Expect = 8e-21 Identities = 197/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 10498708 ATACCTGCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCA 10498649 Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 || ||||||| ||| || || || | || |||||||| |||| ||||| || || || Sbjct 10498648 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 10498590 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 10498589 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 10498530 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 ||| | | || | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 10498529 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 10498470 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051 | | ||||||| |||||| | | ||||| |||||| Sbjct 10498469 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 10498428 Score = 111 bits (122), Expect = 1e-18 Identities = 125/167 (75%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 2510171 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 2510112 Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736 |||||| | | | || ||||||||||||| ||| || || | |||||||| ||| Sbjct 2510111 GTAACTCCTATTCAGCTCTGTGATAAGTATTATGAATTGCATCGCGATGTTTATGAATGG 2510052 Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 2510051 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 2510008 >seq2 Length=11347909 Score = 129 bits (142), Expect = 4e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 3746029 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 3746088 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||| | |||||| ||||| || ||||| || | || |||| | | |||||||| Sbjct 3746089 TGACGTTGCGCATCGTTGAAATAAGCGGGAACCGTGACGACAGCATTTTTCACTTCTTTG 3746148 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 3746149 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATAGCTGAAATTTCTTCG 3746208 Query 282548 GGAG 282551 |||| Sbjct 3746209 GGAG 3746212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740293455703038