Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 89.7 5e-13
seq4763 87.8 2e-12
seq3435 86.0 6e-12
>seq1
Length=3447954
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||||||| | |||| ||||||||||| || || |||||||||||||| ||||||
Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
||| | | ||| | ||| || | || |||||||| | || | || || || ||
Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 864012
Query 137389 AATGTTTTTACGAATATTTGCATA 137412
|||||||| || || || ||||||
Sbjct 864011 AATGTTTTCACAAAAATCTGCATA 863988
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | || || || || ||||| || || |||||||||||||| ||| ||
Sbjct 888945 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 888886
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | ||| | || |||| || || ||||||| || | ||| || || ||||
Sbjct 888885 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 888826
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
| ||||| || |||||||||||
Sbjct 888825 ACGTTTTCACAAATATTTGCAT 888804
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||| ||| | |||||||| ||||||||||| || || || ||||| || ||||||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
||| | | ||| | | ||||| |||||| ||||| | ||| | || || || |||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCAT 814100
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | || || || || ||||| || || |||||||||||||| ||| ||
Sbjct 814573 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 814514
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | ||| | || |||| || || ||||||| || | ||| || || ||||
Sbjct 814513 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 814454
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 814453 ACGTTTTCACAAATATCTGCAT 814432
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | || || || || ||||| || || |||||||||||||| ||| ||
Sbjct 839519 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 839460
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | ||| | || |||| || || ||||||| || | ||| || || ||||
Sbjct 839459 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 839400
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 839399 ACGTTTTCACAAATATCTGCAT 839378
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | || || || || ||||| || || |||||||||||||| ||| ||
Sbjct 849710 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 849651
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | ||| | || |||| || || ||||||| || | ||| || || ||||
Sbjct 849650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 849591
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 849590 ACGTTTTCACAAATATCTGCAT 849569
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||||||| | ||||||||||| |||||||| || || || ||||| || ||||||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
|| | | ||| | ||||||| ||| || ||||| | || | || || || |||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCAT 849237
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||||||| | ||||||||||| |||||||| || || || ||||| || ||||||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
|| | | ||| | ||||||| ||| || ||||| | || | || || || |||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCAT 888472
>seq4763
Length=1852
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||||||| | |||| ||||||||||| || || |||||||||||||| ||||||
Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 1678
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
||| | | ||| | |||||| | || ||||| || | || | || || || ||
Sbjct 1679 CTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 1738
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
|||||||| || || || |||||
Sbjct 1739 AATGTTTTCACAAAAATCTGCAT 1761
>seq3435
Length=827
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | |||| ||||||||||| || || |||||||| || || ||||||
Sbjct 444 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 503
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||| | | ||| | |||||||| || ||||| || | || | || || || || |
Sbjct 504 TTTTCACATTTTCAATCGTGTCTGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTA 563
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
||||||| ||||| || |||||
Sbjct 564 ATGTTTTCACGAAAATCTGCAT 585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488502089031600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |