Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 1e-24
seq3072 125 1e-23
seq5152 118 2e-21
seq3435 114 3e-20
seq4763 105 1e-17
seq3296 96.9 7e-15
seq4234 93.3 8e-14
seq5 93.3 8e-14
seq3791 91.5 3e-13
>seq1
Length=3447954
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||| || || |||||||||||||| || || || ||
Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| ||||| |||||||| || ||||| ||||| || |
Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 816426
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 816425 GTCTTAACAAAAATTTGCATT 816405
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || ||||||||||| |
Sbjct 839517 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 839458
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 839457 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 839398
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 839397 GTTTTCACAAATATCTGCAT 839378
Score = 125 bits (138), Expect = 1e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || ||||| || ||||||||||| ||
Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| |||||||| || |||||| |||||||||||||| || ||||| ||||| ||
Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 786963 AGGGTCTTAACAAAAATTTGCATT 786940
Score = 125 bits (138), Expect = 1e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| || || ||||| || |||||||||||
Sbjct 850347 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 850288
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
|| |||| |||||||| || |||||| |||||||||||||||||||| || || ||
Sbjct 850287 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 850228
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| ||||| || ||||||
Sbjct 850227 GTAAGGGTCTTAACAAAAATTTGCATT 850201
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | |||||||||||| || |||||||||||||| || || || |
Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| |||||||||||||| || ||||| ||||| || |
Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 786670 GTCTTAACAAAAATTTGCATT 786650
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 82670 TCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGC 82729
|||||| || || | | ||||||||| || || |||||||| ||||||||||| || |
Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629
Query 82730 TTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
||| |||||||| || |||||| ||||| |||||||| || ||||| ||||| || |
Sbjct 798628 TTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 798569
Query 82790 CGTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 798568 AGTCTTAACAAAAATTTGCATT 798547
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || || |||||||| |
Sbjct 814571 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 814512
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 814511 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 814452
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 814451 GTTTTCACAAATATCTGCAT 814432
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || || |||||||| |
Sbjct 849708 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 849649
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 849648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 849589
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 849588 GTTTTCACAAATATCTGCAT 849569
Score = 122 bits (134), Expect = 2e-22
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | |||||||| || || ||||| || |||||||||||
Sbjct 889582 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 889523
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
|| |||| |||||||| || |||||| |||||||||||||||||||| || || ||
Sbjct 889522 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 889463
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| ||||| || ||||||
Sbjct 889462 GTAAGGGTCTTAACAAAAATTTGCATT 889436
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | |||||||||||| || |||||||||||||| || || || |
Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||| |||||||| || ||||| ||||| || |
Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 787238 GTCTTAACAAAAATTTGCATT 787218
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| ||||| ||||| ||||| || |||||||||||||| ||
Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| |||| |||||| ||||| |||||||| || || || || || || |
Sbjct 793387 TTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 793328
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 793327 GTCTTAACAAAAATTTGCATT 793307
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || || |||||||| |
Sbjct 888943 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 888884
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 888883 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 888824
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || |||||||| |||||
Sbjct 888823 GTTTTCACAAATATTTGCAT 888804
Score = 116 bits (128), Expect = 7e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || |||||||||||||| || || ||
Sbjct 793162 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 793103
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| |||||||| || || |||||| ||||| |||||||| || ||||| ||||| ||
Sbjct 793102 CCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTA 793043
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 793042 AGAGTCTTAACAAAAATTTGCATT 793019
Score = 114 bits (126), Expect = 3e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| ||||| ||||| ||||| || |||||||||||||| ||
Sbjct 758696 CCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 758637
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| |||| |||||| ||||| |||||||| || || || || || || |
Sbjct 758636 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 758577
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 758576 GTCTTAACAAAAATTTGCATT 758556
Score = 113 bits (124), Expect = 9e-20
Identities = 113/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | || ||| ||||| || || || ||||| || |||||||| |||
Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAAT-TTT 864073
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| || ||||||||||||||| || ||||||||||| || || || || || ||
Sbjct 864072 ACTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 864013
Query 82787 CAACGTCTTTACAAATATCTGCAT 82810
|| || || ||||| ||||||||
Sbjct 864012 TAATGTTTTCACAAAAATCTGCAT 863989
Score = 111 bits (122), Expect = 3e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| ||||| || || ||||| || ||||| || || || ||
Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| |||||||| || |||||| |||||||||||||| || || || ||||| || |
Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 840030 GTCTTAACAAAAATTTGCATT 840010
Score = 111 bits (122), Expect = 3e-19
Identities = 115/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || |||||||||| |||||| ||||| ||||| || ||||||||||| ||||| |||
Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 863390
Query 82728 GCTTTTA-CATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|||||| |||| || || || || ||||| ||||| | ||||| || || || ||
Sbjct 863389 ACTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 863330
Query 82787 CAACGTCTTTACAAATATCTGCATTATT 82814
| ||||| || ||||||||||| |||
Sbjct 863329 AAGTGTCTTCACGAATATCTGCATAATT 863302
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | |||||||| || || ||||| || ||||| ||||| ||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| ||||||||||| | || ||||| ||||||| ||| || || || || |||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 839068 AGAGTTTTGACAAATATCTGCATT 839045
Score = 102 bits (112), Expect = 2e-16
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| || || ||||| || |||||||||||
Sbjct 792882 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 792823
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780
|| |||| |||||||| || |||||| |||||||||||||| || ||||| ||
Sbjct 792822 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 792767
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || ||||||||||| || || || || ||||||| || || || || || |||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCATT 849236
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || ||||||||||| || || || || ||||||| || || || || || |||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCATT 888471
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || ||||| || || | || ||||| || || ||||| || ||||| ||||| ||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| ||||||||||| | || ||||| ||||||| ||| || || || || |||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCATT 814099
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||||||||| || || ||||| || ||||||||||| || ||
Sbjct 816261 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 816202
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||| || | |||| || | ||||| |||||| || | || | || |
Sbjct 816201 TTCTCATTTTCTATTGAATCAGATGGGTGTACTTACAAAGTGATTGATCTGTCAGTAAGA 816142
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 816141 GTCTTAACAAAAATTTGCATT 816121
>seq3072
Length=446
Score = 125 bits (138), Expect = 1e-23
Identities = 114/141 (81%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| ||
Sbjct 235 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAAT-TTTACT 177
Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
||| |||||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 176 TTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 117
Query 82790 CGTCTTTACAAATATCTGCAT 82810
|| || ||||| ||||||||
Sbjct 116 TGTTTTCACAAAAATCTGCAT 96
>seq5152
Length=332
Score = 118 bits (130), Expect = 2e-21
Identities = 114/144 (79%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || ||||| || ||||||||||| ||
Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| |||||||| || |||||| |||||||||||||| || ||| | ||||| ||
Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATC-TTTTGCC-GTG 304
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
|| ||||| ||||| || ||||||
Sbjct 305 AAGGTCTTAACAAAAATTTGCATT 328
>seq3435
Length=827
Score = 114 bits (126), Expect = 3e-20
Identities = 112/142 (79%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| ||
Sbjct 446 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAAT-TTTACT 504
Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
||| |||||||||||||| || ||| ||||| ||||| || || || || || || ||
Sbjct 505 TTTCACATTTTCAATCGTGTCTGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTAA 564
Query 82790 CGTCTTTACAAATATCTGCATT 82811
|| || || || |||||||||
Sbjct 565 TGTTTTCACGAAAATCTGCATT 586
>seq4763
Length=1852
Score = 105 bits (116), Expect = 1e-17
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | || ||| ||||| || || || ||||| || |||||||| |||
Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAAT-TTT 1677
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| || ||||||||||| || ||| ||||| ||||| || || || || || ||
Sbjct 1678 ACTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGT 1737
Query 82787 CAACGTCTTTACAAATATCTGCATT 82811
|| || || ||||| |||||||||
Sbjct 1738 TAATGTTTTCACAAAAATCTGCATT 1762
>seq3296
Length=842
Score = 96.9 bits (106), Expect = 7e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || ||||||| || |||||| ||||| ||||| || ||||||||||| ||||| |||
Sbjct 407 TTACCTGCAAAGACTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 465
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| ||||| || || || || ||||| ||||| | ||||| || || || ||
Sbjct 466 ACTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 525
Query 82787 CAACGTCTTTACAAATATCTGCATTAT 82813
| ||||| || ||||| |||| ||
Sbjct 526 AAGTGTCTTCACGAATATAAGCATAAT 552
>seq4234
Length=1659
Score = 93.3 bits (102), Expect = 8e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
|||||||| || ||||| || || || ||||| | ||| |||||| ||| |||||||||
Sbjct 1039 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCTACTTCC 1098
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| ||||| | || || |||||||| |||||
Sbjct 1099 AAAGTGATGGTCTTTCCTGTTAGAGTTTTCACAAATATTTGCAT 1142
>seq5
Length=5663831
Score = 93.3 bits (102), Expect = 8e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
|||||||| || ||||| || || || ||||| | ||| |||||| ||| |||||||||
Sbjct 476899 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCTACTTCC 476958
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| ||||| | || || |||||||| |||||
Sbjct 476959 AAAGTGATGGTCTTTCCTGTTAGAGTTTTCACAAATATTTGCAT 477002
>seq3791
Length=500
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/142 (75%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||| |||||||| || |||||||||||||| || || || ||
Sbjct 293 CCAGCAAAAATCACACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 352
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| || || |||||| || |||||||| || ||||| ||||| || |
Sbjct 353 TTCACATTCTCTATTGTATCAGATGGCTCTACTTCTTGTGTGATCGTTTTGCCGGTAAGA 412
Query 82791 GTCTTTACA-AATATCTGCATT 82811
||||| ||| || | ||||||
Sbjct 413 GTCTTAACACAAATTTTGCATT 434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981740865786557
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |