Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1557 87.8 3e-12 >seq1557 Length=2489796 Score = 87.8 bits (96), Expect = 3e-12 Identities = 200/299 (67%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 143004 GATCCCGTCTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTA 143063 ||||| || | || ||||||| || ||||||| || |||| | || ||||| || Sbjct 1016322 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCGTTG 1016263 Query 143064 ACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATA 143123 |||||| || | || ||||| |||| || || || |||||||| ||||| | | Sbjct 1016262 GACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTGTTAACAAGTTTG 1016203 Query 143124 GTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATG 143183 || |||| |||||| || || | | | ||||| || ||||||| | ||| Sbjct 1016202 GTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCTGCAATGAATACCTACATG 1016143 Query 143184 TGGGAACATCCTATTACAGAAAAACATAT--AGATGCTTTAAAACAT-ATGGGTTTCATA 143240 |||||||| || | || | ||||| || | | ||| |||| | | || |||| | Sbjct 1016142 TGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAAA 1016083 Query 143241 GAAATAGAATGCATAGaaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299 ||| | ||||| || ||| || || ||||| ||| || ||||||||||||| Sbjct 1016082 GAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 1016024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903333698611680