Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 98.7 1e-15
>seq5
Length=5663831
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/226 (70%), Gaps = 6/226 (3%)
Strand=Plus/Minus
Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724
||||||| || || |||||||||||||| ||||||| |||||||| | ||| | | |
Sbjct 1930276 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 1930217
Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784
| | |||| || | || |||||||| |||||||| | ||| || || || || |
Sbjct 1930216 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACG 1930157
Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGT---CGATCCACTTCATGGCCCACT 120841
|||||| || ||| ||| | | || || | || ||||||| || ||||| |
Sbjct 1930156 CGACCAAACGTTCG--CAAAAT-GGCGACTGACGGTCACCGATCCAGCGCAAAGCCCAGT 1930100
Query 120842 CGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAG 120887
| || ||||| ||||||||| || ||||| |||||| | |||
Sbjct 1930099 CTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAG 1930054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483379328538120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |