Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 1e-15 >seq5 Length=5663831 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 ||||||| || || |||||||||||||| ||||||| |||||||| | ||| | | | Sbjct 1930276 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 1930217 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | |||| || | || |||||||| |||||||| | ||| || || || || | Sbjct 1930216 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACG 1930157 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGT---CGATCCACTTCATGGCCCACT 120841 |||||| || ||| ||| | | || || | || ||||||| || ||||| | Sbjct 1930156 CGACCAAACGTTCG--CAAAAT-GGCGACTGACGGTCACCGATCCAGCGCAAAGCCCAGT 1930100 Query 120842 CGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAG 120887 | || ||||| ||||||||| || ||||| |||||| | ||| Sbjct 1930099 CTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAG 1930054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379328538120