Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 4e-12 >seq7 Length=809302 Score = 87.8 bits (96), Expect = 4e-12 Identities = 171/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||| ||| | ||||| ||||| | ||||||||||| |||| |||||||| || Sbjct 313924 AGAGACCTGGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 313983 Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860 | || || |||| | || ||| | |||||| | |||| || ||||| ||||| || Sbjct 313984 TTGA--CGCGAAAAAGAACACAGGCGTCGAAGAAAACCGAGCGCGAGATTTGTTTTACGC 314041 Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920 | ||||| | ||| |||||||||| || || ||| | || ||||| || || Sbjct 314042 CCTCTGGATACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGAT 314101 Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980 ||| ||||| | |||||| | | ||| | | || | ||||||||| | | || Sbjct 314102 GTGCCCTCACGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 314161 Query 110981 CGAAAAATA 110989 |||||| || Sbjct 314162 CGAAAAGTA 314170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186708440954343