Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq7 87.8 4e-12
>seq7
Length=809302
Score = 87.8 bits (96), Expect = 4e-12
Identities = 171/249 (69%), Gaps = 4/249 (2%)
Strand=Plus/Plus
Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802
||||| ||| | ||||| ||||| | ||||||||||| |||| |||||||| ||
Sbjct 313924 AGAGACCTGGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 313983
Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860
| || || |||| | || ||| | |||||| | |||| || ||||| ||||| ||
Sbjct 313984 TTGA--CGCGAAAAAGAACACAGGCGTCGAAGAAAACCGAGCGCGAGATTTGTTTTACGC 314041
Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920
| ||||| | ||| |||||||||| || || ||| | || ||||| || ||
Sbjct 314042 CCTCTGGATACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGAT 314101
Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980
||| ||||| | |||||| | | ||| | | || | ||||||||| | | ||
Sbjct 314102 GTGCCCTCACGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 314161
Query 110981 CGAAAAATA 110989
|||||| ||
Sbjct 314162 CGAAAAGTA 314170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186708440954343
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |