Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 5e-11 >seq1 Length=3447954 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || ||||| || || ||||||||||| || ||||| |||||||| Sbjct 814430 CCACCGCGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 814371 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 | || ||| |||| ||||| ||||| || | ||| Sbjct 814370 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 814336 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || ||||| || || ||||||||||| || ||||| |||||||| Sbjct 839376 CCACCGCGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 839317 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 | || ||| |||| ||||| ||||| || | ||| Sbjct 839316 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 839282 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || ||||| || || ||||||||||| || ||||| |||||||| Sbjct 849567 CCACCGCGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 849508 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 | || ||| |||| ||||| ||||| || | ||| Sbjct 849507 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 849473 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || ||||| || || ||||||||||| || ||||| |||||||| Sbjct 888802 CCACCGCGCAAACGCAAAACCAAGTGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 888743 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 | || ||| |||| ||||| ||||| || | ||| Sbjct 888742 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 888708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328676506272960