Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1 82.4 7e-11
>seq1
Length=3447954
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040
||||||| | | || |||||||| ||||| || || || || |||||||| ||||||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100
||||| | ||| | | || | || |||||||| | || | ||||| ||||||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123
|||||||| | || ||||||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCAT 814100
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040
||||| | | | || |||||||||||||| || || || || |||||||| ||||||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100
||||| | ||| | | || | || |||||||| | || | ||||| ||||||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123
|||||||| | || ||||||||
Sbjct 839068 AGAGTTTTGACAAATATCTGCAT 839046
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040
||||| | | | || ||||| |||||||| || || || || |||||||| ||||||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100
|||| | ||| | || || | ||||||||||| | || | ||||| ||||||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123
|||||||| | || ||||||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCAT 849237
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040
||||| | | | || ||||| |||||||| || || || || |||||||| ||||||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100
|||| | ||| | || || | ||||||||||| | || | ||||| ||||||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 132101 AGAGTTTTTATGAAAATCTGCAT 132123
|||||||| | || ||||||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCAT 888472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476570312716680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |