Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 6e-12 seq7 84.2 2e-11 >seq1 Length=3447954 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||| || ||| | |||||| | ||||| ||| ||| | Sbjct 793308 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAA-CCATC 793366 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| | ||| | |||||| || ||| ||||||||||| || || |||||||| Sbjct 793367 TGATACTGTTGAGAATGTAAAAGGGAAGATTCAAGATAAAGAGGGAATTCCTCCCGATCA 793426 Query 25294 GCAAAGACTCATTT 25307 |||| | || |||| Sbjct 793427 GCAACGTCTGATTT 793440 >seq7 Length=809302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 |||||||||||| || | || | || || || ||||||| ||||||||| || || || Sbjct 287868 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 287809 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 | |||||||| |||| || ||| || |||| ||| | ||| |||| ||||| Sbjct 287808 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCGGC 287749 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 | | || ||| | ||| ||| || || ||| | | ||| | || |||||||||| Sbjct 287748 TATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATGTC 287689 Query 136818 CAATAGTACTTTTTGCTTAATTTCCCAAGCGGTTTT 136853 | | |||||| |||||||||| | || || Sbjct 287688 TATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 287653 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 |||||||||||| || | || | || || || ||||||| ||||||||| || || || Sbjct 315632 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 315573 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 | |||||||| |||| || ||| || |||| ||| | ||| |||| ||||| Sbjct 315572 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCGGC 315513 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 | | || ||| | ||| ||| || || ||| | | ||| | || |||||||||| Sbjct 315512 TATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATGTC 315453 Query 136818 CAATAGTACTTTTTGCTTAATTTCCCAAGCGGTTTT 136853 | | |||||| |||||||||| | || || Sbjct 315452 TATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 315417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445056216464160