Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq1 86.0 6e-12
seq7 84.2 2e-11
>seq1
Length=3447954
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| || || |||| || ||| | |||||| | ||||| ||| ||| |
Sbjct 793308 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAA-CCATC 793366
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|||||| | ||| | |||||| || ||| ||||||||||| || || ||||||||
Sbjct 793367 TGATACTGTTGAGAATGTAAAAGGGAAGATTCAAGATAAAGAGGGAATTCCTCCCGATCA 793426
Query 25294 GCAAAGACTCATTT 25307
|||| | || ||||
Sbjct 793427 GCAACGTCTGATTT 793440
>seq7
Length=809302
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697
|||||||||||| || | || | || || || ||||||| ||||||||| || || ||
Sbjct 287868 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 287809
Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757
| |||||||| |||| || ||| || |||| ||| | ||| |||| |||||
Sbjct 287808 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCGGC 287749
Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817
| | || ||| | ||| ||| || || ||| | | ||| | || ||||||||||
Sbjct 287748 TATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATGTC 287689
Query 136818 CAATAGTACTTTTTGCTTAATTTCCCAAGCGGTTTT 136853
| | |||||| |||||||||| | || ||
Sbjct 287688 TATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 287653
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697
|||||||||||| || | || | || || || ||||||| ||||||||| || || ||
Sbjct 315632 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 315573
Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757
| |||||||| |||| || ||| || |||| ||| | ||| |||| |||||
Sbjct 315572 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCGGC 315513
Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817
| | || ||| | ||| ||| || || ||| | | ||| | || ||||||||||
Sbjct 315512 TATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATGTC 315453
Query 136818 CAATAGTACTTTTTGCTTAATTTCCCAAGCGGTTTT 136853
| | |||||| |||||||||| | || ||
Sbjct 315452 TATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 315417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445056216464160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |