Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 127 3e-23 >seq5 Length=5663831 Score = 127 bits (140), Expect = 3e-23 Identities = 236/338 (70%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038 ||||||||||| || || || ||||| || ||||| ||||| |||| || |||| ||| Sbjct 1929946 GAGGCACGTTTTTTCTATGGCTTCCAAATTGCCATAGAAAATGTCCATTCCGAAATGTAC 1930005 Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCC 1456098 ||| |||||||||||||| || || ||||| || || || || ||| Sbjct 1930006 AGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAACGTGATTTTCTGTTCAACGCG 1930065 Query 1456099 ATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAG 1456158 ||||| || | |||| |||| |||||| || |||||||| || ||||| | Sbjct 1930066 ATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGAT---CGGT 1930122 Query 1456159 GAGGGCC--TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTT 1456215 || | | ||| || |||| ||| || | |||| || || || || || ||||| || Sbjct 1930123 GACCGTCAGTCGCCATTTTG-CGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTT 1930181 Query 1456216 TTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274 || || ||||| ||| ||| | || || ||| | || ||||||||||| ||||||||| Sbjct 1930182 CTTTTCCGGCAGCTTC-GCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGT- 1930239 Query 1456275 TTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312 || || |||||||| | ||| ||| ||||| || Sbjct 1930240 TTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGGT 1930277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177149251035806