Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 127 3e-23
>seq5
Length=5663831
Score = 127 bits (140), Expect = 3e-23
Identities = 236/338 (70%), Gaps = 10/338 (3%)
Strand=Plus/Plus
Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038
||||||||||| || || || ||||| || ||||| ||||| |||| || |||| |||
Sbjct 1929946 GAGGCACGTTTTTTCTATGGCTTCCAAATTGCCATAGAAAATGTCCATTCCGAAATGTAC 1930005
Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCC 1456098
||| |||||||||||||| || || ||||| || || || || |||
Sbjct 1930006 AGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAACGTGATTTTCTGTTCAACGCG 1930065
Query 1456099 ATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAG 1456158
||||| || | |||| |||| |||||| || |||||||| || ||||| |
Sbjct 1930066 ATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGAT---CGGT 1930122
Query 1456159 GAGGGCC--TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTT 1456215
|| | | ||| || |||| ||| || | |||| || || || || || ||||| ||
Sbjct 1930123 GACCGTCAGTCGCCATTTTG-CGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTT 1930181
Query 1456216 TTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274
|| || ||||| ||| ||| | || || ||| | || ||||||||||| |||||||||
Sbjct 1930182 CTTTTCCGGCAGCTTC-GCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGT- 1930239
Query 1456275 TTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312
|| || |||||||| | ||| ||| ||||| ||
Sbjct 1930240 TTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGGT 1930277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177149251035806
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |