Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 125 1e-23 >seq7 Length=809302 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| || || || | | ||||||||| || ||||||||||| |||| |||||||| Sbjct 287844 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 287785 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 |||||| ||| | ||| | |||| | || |||||||| |||||||||| ||| || Sbjct 287784 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 287725 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573 ||| || ||||| ||||| || || || ||||| | ||| | | ||||| | |||||| Sbjct 287724 TTGGTCAATGAATGCTCCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 287665 Query 68574 CCAAATAGTCTT 68585 ||||| ||||| Sbjct 287664 CCAAACCGTCTT 287653 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| || || || | | ||||||||| || ||||||||||| |||| |||||||| Sbjct 315608 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 315549 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 |||||| ||| | ||| | |||| | || |||||||| |||||||||| ||| || Sbjct 315548 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 315489 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573 ||| || ||||| ||||| || || || ||||| | ||| | | ||||| | |||||| Sbjct 315488 TTGGTCAATGAATGCTCCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 315429 Query 68574 CCAAATAGTCTT 68585 ||||| ||||| Sbjct 315428 CCAAACCGTCTT 315417 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| || ||||| ||||| | ||| |||||||||||||||| | || ||||||| ||| Sbjct 314153 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCACATCAGTGA 314094 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | | || | | || || ||||| |||||||| || ||||| || || ||| Sbjct 314093 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAA 314034 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | ||||| | || |||||||| ||||| || ||||| || ||||| || | Sbjct 314033 CAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 313974 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || | ||||| ||||| | ||| | ||| Sbjct 313973 TATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 313941 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 |||||| | || ||||| || || || |||||| ||||| ||||||||||||||||| Sbjct 314409 ATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 314350 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||| | || || || || ||||| | |||||||| || || |||||||| ||||| Sbjct 314349 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCGGTTTCAATTTGAGA 314290 Query 69435 TTCGATAAT 69443 || ||||| Sbjct 314289 CTCAATAAT 314281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686849871811320