Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq7 125 1e-23
>seq7
Length=809302
Score = 125 bits (138), Expect = 1e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453
||| || || || | | ||||||||| || ||||||||||| |||| ||||||||
Sbjct 287844 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 287785
Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513
|||||| ||| | ||| | |||| | || |||||||| |||||||||| ||| ||
Sbjct 287784 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 287725
Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573
||| || ||||| ||||| || || || ||||| | ||| | | ||||| | ||||||
Sbjct 287724 TTGGTCAATGAATGCTCCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 287665
Query 68574 CCAAATAGTCTT 68585
||||| |||||
Sbjct 287664 CCAAACCGTCTT 287653
Score = 125 bits (138), Expect = 1e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453
||| || || || | | ||||||||| || ||||||||||| |||| ||||||||
Sbjct 315608 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 315549
Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513
|||||| ||| | ||| | |||| | || |||||||| |||||||||| ||| ||
Sbjct 315548 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 315489
Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573
||| || ||||| ||||| || || || ||||| | ||| | | ||||| | ||||||
Sbjct 315488 TTGGTCAATGAATGCTCCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 315429
Query 68574 CCAAATAGTCTT 68585
||||| |||||
Sbjct 315428 CCAAACCGTCTT 315417
Score = 100 bits (110), Expect = 4e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575
||| || ||||| ||||| | ||| |||||||||||||||| | || ||||||| |||
Sbjct 314153 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCACATCAGTGA 314094
Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635
||| | | || | | || || ||||| |||||||| || ||||| || || |||
Sbjct 314093 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAA 314034
Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695
| ||||| | || |||||||| ||||| || ||||| || ||||| || |
Sbjct 314033 CAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 313974
Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728
|| || | ||||| ||||| | ||| | |||
Sbjct 313973 TATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 313941
Score = 93.3 bits (102), Expect = 6e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374
|||||| | || ||||| || || || |||||| ||||| |||||||||||||||||
Sbjct 314409 ATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 314350
Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434
||| | || || || || ||||| | |||||||| || || |||||||| |||||
Sbjct 314349 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCGGTTTCAATTTGAGA 314290
Query 69435 TTCGATAAT 69443
|| |||||
Sbjct 314289 CTCAATAAT 314281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686849871811320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |