Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq5 150 1e-31
>seq5
Length=5663831
Score = 150 bits (166), Expect = 1e-31
Identities = 236/334 (71%), Gaps = 13/334 (4%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963
|| ||| |||||||| ||||| || | || ||||| | ||| ||||| || |||||||||
Sbjct 1929919 CGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCAAATTGCC 1929978
Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT--- 44020
||||||||| | ||||| ||||||||||| || |||| || || |||||| |||
Sbjct 1929979 ATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGATCCG 1930038
Query 44021 -GGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATA 44078
|| ||| | || |||| || ||||| || | || | | |||| | || | |
Sbjct 1930039 GTGGAACGTG----ATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TGAAGAAAA 1930093
Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTG 44135
||||||||||||| | ||||| | | | | | ||| | ||||| | |
Sbjct 1930094 AAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGG 1930153
Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195
||||||| |||| ||| ||||||||||||||||| || || ||| | || || ||||
Sbjct 1930154 TCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGT 1930213
Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229
| || || || || ||||||| || ||||||||
Sbjct 1930214 TGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTT 1930247
Score = 91.5 bits (100), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| ||||| || |||||||||| |||||| ||||||| ||||| |||||||| ||||
Sbjct 1930665 AAAATCCGTTCGACTTTATGGAAATGATTTCGCTGGAAGGTAAAACGAACTTTTTCGAAA 1930724
Query 44553 AACGCGTTGGAGAATATCAG 44572
||||||| || ||||| |||
Sbjct 1930725 AACGCGTCGGCGAATACCAG 1930744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397422755662315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |