Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 150 1e-31 >seq5 Length=5663831 Score = 150 bits (166), Expect = 1e-31 Identities = 236/334 (71%), Gaps = 13/334 (4%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| |||||||| ||||| || | || ||||| | ||| ||||| || ||||||||| Sbjct 1929919 CGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCAAATTGCC 1929978 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT--- 44020 ||||||||| | ||||| ||||||||||| || |||| || || |||||| ||| Sbjct 1929979 ATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGATCCG 1930038 Query 44021 -GGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATA 44078 || ||| | || |||| || ||||| || | || | | |||| | || | | Sbjct 1930039 GTGGAACGTG----ATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TGAAGAAAA 1930093 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTG 44135 ||||||||||||| | ||||| | | | | | ||| | ||||| | | Sbjct 1930094 AAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGG 1930153 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 ||||||| |||| ||| ||||||||||||||||| || || ||| | || || |||| Sbjct 1930154 TCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGT 1930213 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 | || || || || ||||||| || |||||||| Sbjct 1930214 TGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTT 1930247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| ||||| || |||||||||| |||||| ||||||| ||||| |||||||| |||| Sbjct 1930665 AAAATCCGTTCGACTTTATGGAAATGATTTCGCTGGAAGGTAAAACGAACTTTTTCGAAA 1930724 Query 44553 AACGCGTTGGAGAATATCAG 44572 ||||||| || ||||| ||| Sbjct 1930725 AACGCGTCGGCGAATACCAG 1930744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397422755662315