Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq5 89.7 4e-13 seq7 82.4 6e-11 >seq1 Length=3447954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 |||||||| |||| |||||||| ||||| || || | ||||||||||| || || Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||||| |||| | | ||||| || ||| ||||| ||||| || | ||| || ||| Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| || ||||| Sbjct 814122 AGAGTTTTGACAAATATCTGCAT 814100 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| |||||||||||||| || || | ||||||||||| || || Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||||| |||| | | ||||| || ||| ||||| ||||| || | ||| || ||| Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| || ||||| Sbjct 839068 AGAGTTTTGACAAATATCTGCAT 839046 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27101 CTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGAT 27160 ||| ||||| || |||| | ||||||||||||||| || | ||||||||||| || Sbjct 889583 CTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 889524 Query 27161 CTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220 ||| ||||| |||||| || || | | ||| ||||| | |||||| | ||| || Sbjct 889523 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 889464 Query 27221 CGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||| |||||||| Sbjct 889463 AGTAAGGGTCTTAACAAAAATTTGCAT 889437 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27101 CTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGAT 27160 ||| ||||| || |||| | ||| ||||||||||| || | ||||||||||| || Sbjct 850348 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 850289 Query 27161 CTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220 ||| ||||| |||||| || || | | ||| ||||| | |||||| | ||| || Sbjct 850288 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 850229 Query 27221 CGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||| |||||||| Sbjct 850228 AGTAAGGGTCTTAACAAAAATTTGCAT 850202 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| ||||| |||||||| || || | ||||||||||| || || Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||||||| || || ||||| || || || | ||| || ||| Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| || ||||| Sbjct 849259 AGAGTTTTGACAAATATCTGCAT 849237 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| ||||| |||||||| || || | ||||||||||| || || Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||||||| || || ||||| || || || | ||| || ||| Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| || ||||| Sbjct 888494 AGAGTTTTGACAAATATCTGCAT 888472 >seq5 Length=5663831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316 ||| ||| |||||||||||| ||||||||||||| ||||| ||||| ||||||||||| | Sbjct 1930745 TCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCCAGCGAAATCATTT 1930686 Query 108317 TCATAAAATGAAAGGGATT 108335 |||||| | || ||||| Sbjct 1930685 CCATAAAGTCGAACGGATT 1930667 >seq7 Length=809302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131552 TAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCG 131611 || |||||||| || ||||||| | | ||| || || |||| ||||||||| Sbjct 314170 TACTTTTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCG 314111 Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGC 131671 || ||||| || ||||| | |||| ||||| |||||||| || | ||| || Sbjct 314110 TGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGT 314051 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttC 131731 | ||| | ||||| |||| ||||| ||| || ||||| || | | |||||| Sbjct 314050 ATCCAGAGGGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTC 313991 Query 131732 AAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | | ||| || || ||||| || ||||| ||||||||||| || || Sbjct 313990 GCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 313941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424898857291656