Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 3e-15
seq5 89.7 4e-13
seq7 82.4 6e-11
>seq1
Length=3447954
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
|||||||| |||| |||||||| ||||| || || | ||||||||||| || ||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
||||| |||| | | ||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCAT 814100
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| |||||||||||||| || || | ||||||||||| || ||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
||||| |||| | | ||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 839068 AGAGTTTTGACAAATATCTGCAT 839046
Score = 89.7 bits (98), Expect = 4e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 27101 CTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGAT 27160
||| ||||| || |||| | ||||||||||||||| || | ||||||||||| ||
Sbjct 889583 CTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 889524
Query 27161 CTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220
||| ||||| |||||| || || | | ||| ||||| | |||||| | ||| ||
Sbjct 889523 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 889464
Query 27221 CGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || ||||| ||||||||
Sbjct 889463 AGTAAGGGTCTTAACAAAAATTTGCAT 889437
Score = 86.0 bits (94), Expect = 5e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 27101 CTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGAT 27160
||| ||||| || |||| | ||| ||||||||||| || | ||||||||||| ||
Sbjct 850348 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 850289
Query 27161 CTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220
||| ||||| |||||| || || | | ||| ||||| | |||||| | ||| ||
Sbjct 850288 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 850229
Query 27221 CGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || ||||| ||||||||
Sbjct 850228 AGTAAGGGTCTTAACAAAAATTTGCAT 850202
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || || ||||| || || || | ||| || |||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCAT 849237
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || || ||||| || || || | ||| || |||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCAT 888472
>seq5
Length=5663831
Score = 89.7 bits (98), Expect = 4e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316
||| ||| |||||||||||| ||||||||||||| ||||| ||||| ||||||||||| |
Sbjct 1930745 TCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCCAGCGAAATCATTT 1930686
Query 108317 TCATAAAATGAAAGGGATT 108335
|||||| | || |||||
Sbjct 1930685 CCATAAAGTCGAACGGATT 1930667
>seq7
Length=809302
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 131552 TAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCG 131611
|| |||||||| || ||||||| | | ||| || || |||| |||||||||
Sbjct 314170 TACTTTTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCG 314111
Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGC 131671
|| ||||| || ||||| | |||| ||||| |||||||| || | ||| ||
Sbjct 314110 TGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGT 314051
Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttC 131731
| ||| | ||||| |||| ||||| ||| || ||||| || | | ||||||
Sbjct 314050 ATCCAGAGGGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTC 313991
Query 131732 AAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781
| | ||| || || ||||| || ||||| ||||||||||| || ||
Sbjct 313990 GCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 313941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424898857291656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |