Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq5 91.5 5e-13
>seq5
Length=5663831
Score = 91.5 bits (100), Expect = 5e-13
Identities = 96/125 (77%), Gaps = 1/125 (1%)
Strand=Plus/Plus
Query 443715 GTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTG 443774
||||| || || | || ||||| | || ||| ||||||||| || || || |||||
Sbjct 1930153 GTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTC-GCGTCAATTTTCTG 1930211
Query 443775 GTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGA 443834
|||||||||||| || || |||| |||| |||| || || ||||| |||||| ||| ||
Sbjct 1930212 GTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGA 1930271
Query 443835 CGAGG 443839
|||||
Sbjct 1930272 CGAGG 1930276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588196334141035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |