Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 4e-15 seq5 84.2 2e-11 >seq7 Length=809302 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || || || |||||||||||||| ||||| | ||||| Sbjct 287834 GTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGAT 287775 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || || | |||| | | ||| || || | ||||||||| ||||| ||| Sbjct 287774 GTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATG 287715 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 | || || | ||||| |||||||| ||||| | ||||| | ||| ||||| Sbjct 287714 AATGCTCCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCA 287662 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || || || |||||||||||||| ||||| | ||||| Sbjct 315598 GTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGAT 315539 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || || | |||| | | ||| || || | ||||||||| ||||| ||| Sbjct 315538 GTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATG 315479 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 | || || | ||||| |||||||| ||||| | ||||| | ||| ||||| Sbjct 315478 AATGCTCCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCA 315426 >seq5 Length=5663831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 195/289 (67%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 |||| ||||| | |||| ||| ||||||| | | || ||||||| || | Sbjct 1929989 TCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAACGTG 1930048 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 | ||||||| || || ||||| | || || || || |||||||||| ||||| Sbjct 1930049 ATTTTCTGTTCAACGCGATCGAGACCATTCCGTGC-GTGAAGAAAAAAGCAGACTGGGCT 1930107 Query 59946 ATGCAGTGGATGAGT--CCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 ||| ||||| || || || | ||||| ||||| | | || || ||| Sbjct 1930108 TTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCT 1930167 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| || ||||| || ||| ||| | ||||||||| | |||||||| ||| Sbjct 1930168 GTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGC 1930227 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || ||| ||| |||||||||||| || || ||||||| Sbjct 1930228 CTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGG 1930276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548477743428720