Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 5e-25
seq4763 91.5 1e-13
>seq1
Length=3447954
Score = 129 bits (142), Expect = 5e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | |||||||| ||||||||||| ||
Sbjct 839046 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 839105
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||| ||||| | || ||| |||||||| || ||||| || || ||||||||||||
Sbjct 839106 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 839165
Query 27108 CAGCGT 27113
||||||
Sbjct 839166 CAGCGT 839171
Score = 127 bits (140), Expect = 2e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | |||||||| ||||||||||| ||
Sbjct 814100 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 814159
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||| ||||| | || ||| |||||||| || ||||| || || |||||||||||
Sbjct 814160 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAG 814219
Query 27108 CAGCGTTTAATATACGCCGGCAA 27130
|||||| | || | ||||| ||
Sbjct 814220 CAGCGTCTGATTTTTGCCGGTAA 814242
Score = 113 bits (124), Expect = 4e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 839378 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 839437
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || |||||||||||||||||||| ||||| ||||||
Sbjct 839438 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 839497
Query 27108 CAGCG 27112
|||||
Sbjct 839498 CAGCG 839502
Score = 109 bits (120), Expect = 5e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 814432 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 814491
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || ||||| |||||||||||||| ||||| ||||||
Sbjct 814492 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 814551
Query 27108 CAGCG 27112
|||||
Sbjct 814552 CAGCG 814556
Score = 109 bits (120), Expect = 5e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 849569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 849628
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || ||||| |||||||||||||| ||||| ||||||
Sbjct 849629 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 849688
Query 27108 CAGCG 27112
|||||
Sbjct 849689 CAGCG 849693
Score = 105 bits (116), Expect = 6e-18
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | ||||| || |||||||| || ||
Sbjct 849237 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 849296
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || |||||||| || ||||| || || ||||||||||||
Sbjct 849297 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 849356
Query 27108 CAGCGT 27113
|| |||
Sbjct 849357 CAACGT 849362
Score = 105 bits (116), Expect = 6e-18
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | ||||| || |||||||| || ||
Sbjct 888472 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 888531
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || |||||||| || ||||| || || ||||||||||||
Sbjct 888532 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 888591
Query 27108 CAGCGT 27113
|| |||
Sbjct 888592 CAACGT 888597
Score = 104 bits (114), Expect = 2e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 888804 ATGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 888863
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || ||||| |||||||||||||| ||||| ||||||
Sbjct 888864 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 888923
Query 27108 CAGCG 27112
|||||
Sbjct 888924 CAGCG 888928
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| |||||||| | || || | ||||||||||| ||
Sbjct 798548 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 798607
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||||||||||| |||||||| || ||||| ||||||
Sbjct 798608 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 798667
Query 27108 CAGCGTTTAAT 27118
|| ||||| ||
Sbjct 798668 CAACGTTTGAT 798678
Score = 91.5 bits (100), Expect = 1e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| |||||||| | || || | ||||||||||| ||
Sbjct 793020 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 793079
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| || || ||||| || || || ||||| || ||||| ||||||
Sbjct 793080 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 793139
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTG 27137
|| ||||| |||| || || || |||||
Sbjct 793140 CAACGTTTGATATTTGCTGGTAAGTAATTG 793169
Score = 91.5 bits (100), Expect = 1e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| | || || || | || || | ||||| || || ||
Sbjct 863989 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 864048
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||||| | || ||| ||||||||||||||||||||||| ||||| |||||
Sbjct 864049 GATACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 864108
Query 27108 CAGCGTTTAATAT 27120
|| || || ||||
Sbjct 864109 CAACGATTGATAT 864121
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || |||||||| | || || | ||||| ||||| ||
Sbjct 786941 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 787000
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||||||||||| ||||| || || ||||| ||||||
Sbjct 787001 GATACCATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 787060
Query 27108 CAGCGTTTAAT 27118
|| ||||| ||
Sbjct 787061 CAACGTTTGAT 787071
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| |||||||| | || || | ||||||||||| ||
Sbjct 816406 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 816465
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| ||||| || || || ||||| || ||||| ||||||
Sbjct 816466 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 816525
Query 27108 CAGCGT 27113
|| |||
Sbjct 816526 CAACGT 816531
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||||||| || || || || || || || |||| || || ||||| ||||| ||
Sbjct 863306 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 863365
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| || ||| |||||||| || || |||||||| || || |||||
Sbjct 863366 GACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 863425
Query 27108 CAGCGTTTAAT 27118
|| | |||||
Sbjct 863426 CAAAGATTAAT 863436
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || || || | || ||| | ||||| ||||| ||
Sbjct 889437 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 889496
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||||||||||| ||||| || || ||||| ||||||
Sbjct 889497 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 889556
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136
|||||||| || | || || || || ||
Sbjct 889557 CAGCGTTTGATTTTTGCTGGTAAGCAGTT 889585
>seq4763
Length=1852
Score = 91.5 bits (100), Expect = 1e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| | || || || | || || | || || || || ||
Sbjct 1761 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCG 1702
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | || ||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1701 GACACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 1642
Query 27108 CAGCGTTTAATAT 27120
|| || || ||||
Sbjct 1641 CAACGATTGATAT 1629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434881089437760
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