Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq4763 91.5 1e-13 >seq1 Length=3447954 Score = 129 bits (142), Expect = 5e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||||||||| || || | |||||||| ||||||||||| || Sbjct 839046 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 839105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| |||||||| || ||||| || || |||||||||||| Sbjct 839106 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 839165 Query 27108 CAGCGT 27113 |||||| Sbjct 839166 CAGCGT 839171 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||||||||| || || | |||||||| ||||||||||| || Sbjct 814100 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 814159 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| |||||||| || ||||| || || ||||||||||| Sbjct 814160 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAG 814219 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||| | || | ||||| || Sbjct 814220 CAGCGTCTGATTTTTGCCGGTAA 814242 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || || | ||||| |||||||| || ||||| Sbjct 839378 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 839437 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||||||||||||||| ||||| |||||| Sbjct 839438 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 839497 Query 27108 CAGCG 27112 ||||| Sbjct 839498 CAGCG 839502 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || || | ||||| |||||||| || ||||| Sbjct 814432 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 814491 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||| |||||||||||||| ||||| |||||| Sbjct 814492 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 814551 Query 27108 CAGCG 27112 ||||| Sbjct 814552 CAGCG 814556 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || || | ||||| |||||||| || ||||| Sbjct 849569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 849628 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||| |||||||||||||| ||||| |||||| Sbjct 849629 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 849688 Query 27108 CAGCG 27112 ||||| Sbjct 849689 CAGCG 849693 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||||||||| || || | ||||| || |||||||| || || Sbjct 849237 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 849296 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| || ||||| || || |||||||||||| Sbjct 849297 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 849356 Query 27108 CAGCGT 27113 || ||| Sbjct 849357 CAACGT 849362 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||||||||| || || | ||||| || |||||||| || || Sbjct 888472 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 888531 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| || ||||| || || |||||||||||| Sbjct 888532 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 888591 Query 27108 CAGCGT 27113 || ||| Sbjct 888592 CAACGT 888597 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| ||||| |||| || || | ||||| |||||||| || ||||| Sbjct 888804 ATGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 888863 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||| |||||||||||||| ||||| |||||| Sbjct 888864 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 888923 Query 27108 CAGCG 27112 ||||| Sbjct 888924 CAGCG 888928 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| |||||||| | || || | ||||||||||| || Sbjct 798548 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 798607 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| |||||||| || ||||| |||||| Sbjct 798608 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 798667 Query 27108 CAGCGTTTAAT 27118 || ||||| || Sbjct 798668 CAACGTTTGAT 798678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| |||||||| | || || | ||||||||||| || Sbjct 793020 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 793079 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||||| || || || ||||| || ||||| |||||| Sbjct 793080 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 793139 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTG 27137 || ||||| |||| || || || ||||| Sbjct 793140 CAACGTTTGATATTTGCTGGTAAGTAATTG 793169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || || || | || || | ||||| || || || Sbjct 863989 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 864048 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || ||| ||||||||||||||||||||||| ||||| ||||| Sbjct 864049 GATACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 864108 Query 27108 CAGCGTTTAATAT 27120 || || || |||| Sbjct 864109 CAACGATTGATAT 864121 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || |||||||| | || || | ||||| ||||| || Sbjct 786941 ATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 787000 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 787001 GATACCATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 787060 Query 27108 CAGCGTTTAAT 27118 || ||||| || Sbjct 787061 CAACGTTTGAT 787071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| |||||||| | || || | ||||||||||| || Sbjct 816406 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 816465 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| || || || ||||| || ||||| |||||| Sbjct 816466 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 816525 Query 27108 CAGCGT 27113 || ||| Sbjct 816526 CAACGT 816531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || || || || |||| || || ||||| ||||| || Sbjct 863306 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 863365 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| |||||||| || || |||||||| || || ||||| Sbjct 863366 GACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 863425 Query 27108 CAGCGTTTAAT 27118 || | ||||| Sbjct 863426 CAAAGATTAAT 863436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || || | || ||| | ||||| ||||| || Sbjct 889437 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 889496 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| ||||| || || ||||| |||||| Sbjct 889497 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 889556 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136 |||||||| || | || || || || || Sbjct 889557 CAGCGTTTGATTTTTGCTGGTAAGCAGTT 889585 >seq4763 Length=1852 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || || || | || || | || || || || || Sbjct 1761 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCG 1702 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || ||| ||||||||||||||||||||||| ||||| ||||| Sbjct 1701 GACACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 1642 Query 27108 CAGCGTTTAATAT 27120 || || || |||| Sbjct 1641 CAACGATTGATAT 1629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434881089437760