Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq3435 84.2 2e-11 >seq1 Length=3447954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || |||||| Sbjct 814336 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 814395 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || ||||||||||||||||| || || Sbjct 814396 AGCACGCTTCACTTGGTTTTGCGTTTGCGCGGTGG 814430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || |||||| Sbjct 839282 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 839341 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || ||||||||||||||||| || || Sbjct 839342 AGCACGCTTCACTTGGTTTTGCGTTTGCGCGGTGG 839376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || |||||| Sbjct 849473 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 849532 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || ||||||||||||||||| || || Sbjct 849533 AGCACGCTTCACTTGGTTTTGCGTTTGCGCGGTGG 849567 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || |||||| Sbjct 888708 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 888767 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || ||||||||||||||||| || || Sbjct 888768 AGCACGCTTCACTTGGTTTTGCGTTTGCGCGGTGG 888802 >seq3435 Length=827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || || || || || ||||| ||||| ||||| |||||| Sbjct 675 GGGAAACAACTGGAAGATGGTCGTAGGTTATCGGACTACAATATCCAGAAAGAAAGCACT 616 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 615 TTGCATTTGGTGCTGCGTTTACGTGGCGG 587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355832634668001