Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 8e-15 seq3296 84.2 5e-11 >seq1 Length=3447954 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| ||||| | | ||| || |||||||||| |||||||| ||||| || || Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 863389 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || ||||||||||| || |||||| || || || || || ||||| || Sbjct 863388 CTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 863329 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 863328 AGTGTCTTCACGAATATCTGCAT 863306 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 |||||||| || || |||| ||||||||| ||||| || || || || || || || Sbjct 786775 CGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCCTTTACATTCTCTATT 786716 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || ||||| ||| || || | |||||||| || || ||||||||||| ||||| | Sbjct 786715 GTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGAGTCTTAACAAAAATT 786656 Query 211110 TGCATT 211115 |||||| Sbjct 786655 TGCATT 786650 >seq3296 Length=842 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| |||| | | ||| || |||||||||| |||||||| ||||| || || Sbjct 407 TTACCTGCAAAGACTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 466 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || ||||||||||| || |||||| || || || || || ||||| || Sbjct 467 CTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 526 Query 211092 AGAGTCTTTACAAA 211105 || ||||| || || Sbjct 527 AGTGTCTTCACGAA 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159050073228995