Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 4e-12 seq4763 84.2 1e-11 >seq1 Length=3447954 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 814432 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 814491 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 814492 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 814551 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 814552 CAGCGGCTTATTTTTGCTGG 814571 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 839378 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 839437 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 839438 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 839497 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 839498 CAGCGGCTTATTTTTGCTGG 839517 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 849569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 849628 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 849629 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 849688 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 849689 CAGCGGCTTATTTTTGCTGG 849708 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| || || || ||||| || ||||| ||||| || || Sbjct 814097 AAAATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCC 814156 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| | |||||| | ||| |||||| || ||||| || | || || ||| Sbjct 814157 TCAGACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 814216 Query 23728 CAACAGCGTTTAATATTTGCCGGCAA 23753 || |||||| | || |||||||| || Sbjct 814217 CAGCAGCGTCTGATTTTTGCCGGTAA 814242 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| || || || ||||| || ||||| ||||| || || Sbjct 839043 AAAATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCC 839102 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| | |||||| | ||| |||||| || ||||| || | || || ||| Sbjct 839103 TCAGACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 839162 Query 23728 CAACAGCGTTTAATATTTGCCGGCAA 23753 ||||||||| | || ||||| || || Sbjct 839163 CAACAGCGTCTGATTTTTGCTGGTAA 839188 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 888804 ATGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 888863 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 888864 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 888923 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 888924 CAGCGGCTTATTTTTGCTGG 888943 >seq4763 Length=1852 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| | || |||||||| ||||| | || || || | | Sbjct 1762 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTC 1703 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | ||| |||||| ||||||||||| | || || ||||| Sbjct 1702 GGACACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCA 1643 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 || || || |||||||| || || Sbjct 1642 GCAACGATTGATATTTGCTGGTAA 1619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337981327926404