Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq5 122 7e-23
>seq5
Length=5663831
Score = 122 bits (134), Expect = 7e-23
Identities = 239/349 (68%), Gaps = 12/349 (3%)
Strand=Plus/Minus
Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643
||||| ||||| ||||| || |||||||| | || | |||||| | ||| || ||
Sbjct 1930262 ATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTCAACCAGAAAATT 1930203
Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703
| || || || |||||||| |||||||| || || || ||||| || || ||
Sbjct 1930202 GACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCGACCAAACGTTCG 1930143
Query 4704 CCGAA---CGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTA 4760
| || ||| ||| | ||| ||||| || ||||||| |||||||||||
Sbjct 1930142 CAAAATGGCGA-CTGACG--GTCACCGATCCAGCGCAAAGCCCAGTCTGCTTTTTTCTTC 1930086
Query 4761 ACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGA 4817
||||||||||| || | || ||||| || || | || ||| | || || |
Sbjct 1930085 ACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCAC---GTTCCACCGGATCACGG 1930029
Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877
|| || ||||| || | ||||| |||||||| ||||| | ||||||||| ||||| ||
Sbjct 1930028 ATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATGGCAATTTGG 1929969
Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
|| || || || | | || || |||||||||| ||| | ||||||
Sbjct 1929968 AAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATC 1929920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427013880370379
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |