Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5 122 7e-23 >seq5 Length=5663831 Score = 122 bits (134), Expect = 7e-23 Identities = 239/349 (68%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 ||||| ||||| ||||| || |||||||| | || | |||||| | ||| || || Sbjct 1930262 ATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTCAACCAGAAAATT 1930203 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703 | || || || |||||||| |||||||| || || || ||||| || || || Sbjct 1930202 GACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCGACCAAACGTTCG 1930143 Query 4704 CCGAA---CGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTA 4760 | || ||| ||| | ||| ||||| || ||||||| ||||||||||| Sbjct 1930142 CAAAATGGCGA-CTGACG--GTCACCGATCCAGCGCAAAGCCCAGTCTGCTTTTTTCTTC 1930086 Query 4761 ACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGA 4817 ||||||||||| || | || ||||| || || | || ||| | || || | Sbjct 1930085 ACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCAC---GTTCCACCGGATCACGG 1930029 Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || || ||||| || | ||||| |||||||| ||||| | ||||||||| ||||| || Sbjct 1930028 ATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATGGCAATTTGG 1929969 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || | | || || |||||||||| ||| | |||||| Sbjct 1929968 AAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATC 1929920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427013880370379