Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq7 140 5e-28
>seq7
Length=809302
Score = 140 bits (154), Expect = 5e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
|| |||| ||||| ||||| | | ||| || || || | | ||||||||| |||
Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| |||||| |||| |||||||||||||| ||| | ||| | |||| ||||
Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
|||||||| |||||||||| |||||| ||| || ||||| ||||| || || || |||
Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589
|| | ||| | | ||||| | ||||||||||| || |||
Sbjct 287693 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 287652
Score = 140 bits (154), Expect = 5e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
|| |||| ||||| ||||| | | ||| || || || | | ||||||||| |||
Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| |||||| |||| |||||||||||||| ||| | ||| | |||| ||||
Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
|||||||| |||||||||| |||||| ||| || ||||| ||||| || || || |||
Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589
|| | ||| | | ||||| | ||||||||||| || |||
Sbjct 315457 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 315416
Score = 111 bits (122), Expect = 2e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570
||||| |||||| ||||| ||||| | ||| |||| ||||||||||| | || |||
Sbjct 314161 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCAC 314102
Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630
|||| |||||| || || || | | || || ||||| || |||||||||||||| ||
Sbjct 314101 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 314042
Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690
|| ||| | |||||| | || |||||| ||||| |||||||| || ||
Sbjct 314041 GCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 313982
Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731
|| || | || || | ||||| ||||| | ||| | |||
Sbjct 313981 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 313941
Score = 109 bits (120), Expect = 8e-19
Identities = 195/280 (70%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938
||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || |
Sbjct 314982 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 314923
Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998
| ||||| ||| || | ||| || ||||| | || || || || | |||||||
Sbjct 314922 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAAC 314863
Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055
| ||||||||| | ||||| || ||||| ||||| |||||||| | |||| ||
Sbjct 314862 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 314803
Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115
|||| || | |||| ||||| | | | ||| || ||||| || | ||| || || |
Sbjct 314802 CTTCG-GATT--CAAACGGATATCGCATCAAAATGAAAGCATCCGCCAATCCTTGCACAC 314746
Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155
|||||||||| |||| ||| | || || || |||| ||
Sbjct 314745 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGC 314706
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
|||||||||||| || | || | ||||| || | ||| || || | ||| || ||
Sbjct 315212 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 315153
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
||||||||| ||||||||||| || || || ||||||||||| || |||| ||| ||
Sbjct 315152 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAACGA 315093
Query 75841 ATTTCTGAGACCAT 75854
|||||| |||||||
Sbjct 315092 ATTTCTCAGACCAT 315079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712873239140160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |