Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1 93.3 9e-14
seq4763 84.2 5e-11
>seq1
Length=3447954
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||||||||| || |||||| || ||||| || || || || |
Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671
Query 283080 GTCTTAACGAATATCTGCATT 283100
|||||||| || || ||||||
Sbjct 786670 GTCTTAACAAAAATTTGCATT 786650
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||||||||||||| || ||||| ||||| || ||||| || ||
Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|||| || | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| |||||||| || || ||||||
Sbjct 786963 AGGGTCTTAACAAAAATTTGCATT 786940
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||||||||||||| || ||||| || ||||| || || || ||
Sbjct 793162 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 793103
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| ||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 793102 CCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTA 793043
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || || ||||||
Sbjct 793042 AGAGTCTTAACAAAAATTTGCATT 793019
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| |||||||| |||| ||| || || || ||||| ||||| || || || || ||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|||| || | || || | ||| || | ||| ||||| ||||| || || || || |||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103
| ||| || || |||||||||||||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCATTTTC 814096
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||| ||||| || ||||| ||||| || || || || ||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
|||| || | || || | ||| || | ||| ||||| ||||| || || || || |||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103
| ||| || || |||||||||||||||
Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTTC 839042
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||||||||| || |||||| || ||||| || || || || |
Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || |
Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239
Query 283080 GTCTTAACGAATATCTGCATT 283100
|||||||| || || ||||||
Sbjct 787238 GTCTTAACAAAAATTTGCATT 787218
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013
|| || || ||||| |||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 850347 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 850288
Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073
|| |||| || | || || || || || | ||| ||||| | ||| || || || ||
Sbjct 850287 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 850228
Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100
|| | |||||||| || || ||||||
Sbjct 850227 GTAAGGGTCTTAACAAAAATTTGCATT 850201
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| || | ||| || ||| ||||| || ||||| || || || |||
Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 863390
Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|||||| | | ||||| ||||| || | ||| ||||| || || || || || || ||
Sbjct 863389 ACTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 863330
Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||||||||||||
Sbjct 863329 AAGTGTCTTCACGAATATCTGCAT 863306
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || || |||||||||||||| || ||||| || || || ||||| || || ||
Sbjct 798687 CCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 798628
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 798627 TTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 798568
Query 283080 GTCTTAACGAATATCTGCATT 283100
|||||||| || || ||||||
Sbjct 798567 GTCTTAACAAAAATTTGCATT 798547
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || || ||||| || | || ||||| || || || || || || |||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102
| ||| || || ||||||||||||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTT 849234
Score = 84.2 bits (92), Expect = 5e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930
|||| ||||| ||||| | |||| ||| || ||||||||||||||||| |||||||| |
Sbjct 864276 AACCTCCACGAAGGCGCAACACCAAATGCAAAGTGCTTTCTTTTTGGATATTGTAGTCGG 864217
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961
| || || ||||| || |||||||||||
Sbjct 864216 ATAATGTACGACCATCTTCCAGTTGTTTCCC 864186
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || || ||||| || | || ||||| || || || || || || |||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102
| ||| || || ||||||||||||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTT 888469
>seq4763
Length=1852
Score = 84.2 bits (92), Expect = 5e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930
|||| ||||| ||||| | |||| ||| || ||||||||||||||||| |||||||| |
Sbjct 1474 AACCTCCACGAAGGCGCAACACCAAATGCAAAGTGCTTTCTTTTTGGATATTGTAGTCGG 1533
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961
| || || ||||| || |||||||||||
Sbjct 1534 ATAATGTACGACCATCTTCCAGTTGTTTCCC 1564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046647157932402
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |