Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 105 2e-17 seq3296 98.7 2e-15 seq4763 91.5 4e-13 seq3435 86.0 2e-11 >seq1 Length=3447954 Score = 105 bits (116), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 || |||| | || || |||||||| || || || |||||||| || || || || || | Sbjct 863298 TTCAAATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTG 863357 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||||||||||||||||| || ||| || |||||||| || ||||| || |||| Sbjct 863358 AACCATCAGACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 863417 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 | || |||||| || | ||||| || || || Sbjct 863418 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 863448 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| | |||||||||||||| || || || || || ||||| Sbjct 888807 CAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 888866 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||||||||||||||| ||||| || || || || Sbjct 888867 ACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAACAG 888926 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 888927 CGGCTTATTTTTGCTGG 888943 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||||||||| || || || || || ||||| Sbjct 814435 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 814494 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||||||||||||||| ||||| || || || || Sbjct 814495 ACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAACAG 814554 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 814555 CGGCTTATTTTTGCTGG 814571 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||||||||| || || || || || ||||| Sbjct 849572 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 849631 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||||||||||||||| ||||| || || || || Sbjct 849632 ACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAACAG 849691 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 849692 CGGCTTATTTTTGCTGG 849708 Score = 91.5 bits (100), Expect = 4e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || |||||| || || Sbjct 798551 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCTGAT 798610 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || ||||||||||| || ||||| || ||| Sbjct 798611 ACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAACAA 798670 Query 178044 CGACTTATCTTCGCCGGA 178061 || | || || || ||| Sbjct 798671 CGTTTGATTTTAGCTGGA 798688 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || |||||| || || Sbjct 816409 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCTGAT 816468 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 816469 ACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 816528 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 816529 CGTCTGATTTTTGCTGG 816545 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | |||||||||||||| || || || || || ||||| Sbjct 839381 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 839440 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| ||||||||||| ||||| || || || || Sbjct 839441 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAG 839500 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 839501 CGGCTTATTTTTGCTGG 839517 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || ||||| || |||||||||||| | || || ||| || || Sbjct 786944 CAAATTTTTGTTAAGACCCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 787003 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| || ||||| ||||| || ||||| || ||| Sbjct 787004 ACCATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAACAA 787063 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 787064 CGTTTGATTTTTGCTGGTAA 787083 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || |||||| || || Sbjct 793023 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCTGAT 793082 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || || ||||| || |||||||| || ||||| || ||| Sbjct 793083 ACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 793142 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 793143 CGTTTGATATTTGCTGGTAA 793162 >seq3296 Length=842 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || |||||||| || || || |||||||| || || || || || ||| ||||||||| Sbjct 543 ATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCAGACACC 484 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 |||||||| || ||| || |||||||| || ||||| || ||||| || |||||| || Sbjct 483 ATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAGCAAAGA 424 Query 178047 CTTATCTTCGCCGGAAA 178063 | |||| || || || Sbjct 423 TTAGTCTTTGCAGGTAA 407 >seq4763 Length=1852 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| | || |||||||| ||||| | ||||| || || ||| Sbjct 1758 CAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCGGAC 1699 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || ||||| ||||||||||| || || || || |||||| Sbjct 1698 ACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAGCAA 1639 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | || || || || || Sbjct 1638 CGATTGATATTTGCTGGTAA 1619 >seq3435 Length=827 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | || |||||||| ||||| | ||||| || |||||| Sbjct 582 CAGATTTTCGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCAGAC 523 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || || ||||| || || || || |||||| Sbjct 522 ACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGCAA 463 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || || || || Sbjct 462 CGATTGATATTTGCTGG 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203625353282422