Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 2e-17
seq3296 98.7 2e-15
seq4763 91.5 4e-13
seq3435 86.0 2e-11
>seq1
Length=3447954
Score = 105 bits (116), Expect = 2e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
|| |||| | || || |||||||| || || || |||||||| || || || || || |
Sbjct 863298 TTCAAATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTG 863357
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| ||||||||||||||||| || ||| || |||||||| || ||||| || ||||
Sbjct 863358 AACCATCAGACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 863417
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063
| || |||||| || | ||||| || || ||
Sbjct 863418 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 863448
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 888807 CAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 888866
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||||||||||||||| ||||| || || || ||
Sbjct 888867 ACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAACAG 888926
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 888927 CGGCTTATTTTTGCTGG 888943
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 814435 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 814494
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||||||||||||||| ||||| || || || ||
Sbjct 814495 ACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAACAG 814554
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 814555 CGGCTTATTTTTGCTGG 814571
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 849572 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 849631
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||||||||||||||| ||||| || || || ||
Sbjct 849632 ACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAACAG 849691
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 849692 CGGCTTATTTTTGCTGG 849708
Score = 91.5 bits (100), Expect = 4e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || |||||| || ||
Sbjct 798551 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCTGAT 798610
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || ||||| || ||||||||||| || ||||| || |||
Sbjct 798611 ACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAACAA 798670
Query 178044 CGACTTATCTTCGCCGGA 178061
|| | || || || |||
Sbjct 798671 CGTTTGATTTTAGCTGGA 798688
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || |||||| || ||
Sbjct 816409 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCTGAT 816468
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || ||||| || |||||||| || ||||| || |||
Sbjct 816469 ACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 816528
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 816529 CGTCTGATTTTTGCTGG 816545
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 839381 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 839440
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| ||||| || || || ||
Sbjct 839441 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAACAG 839500
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 839501 CGGCTTATTTTTGCTGG 839517
Score = 86.0 bits (94), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || || ||||| || |||||||||||| | || || ||| || ||
Sbjct 786944 CAAATTTTTGTTAAGACCCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 787003
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || ||| || ||||| || ||||| ||||| || ||||| || |||
Sbjct 787004 ACCATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAACAA 787063
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 787064 CGTTTGATTTTTGCTGGTAA 787083
Score = 86.0 bits (94), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || ||||| || || |||||||||||| | || |||||| || ||
Sbjct 793023 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCTGAT 793082
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || || || || ||||| || |||||||| || ||||| || |||
Sbjct 793083 ACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 793142
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 793143 CGTTTGATATTTGCTGGTAA 793162
>seq3296
Length=842
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986
|| |||||||| || || || |||||||| || || || || || ||| |||||||||
Sbjct 543 ATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCAGACACC 484
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
|||||||| || ||| || |||||||| || ||||| || ||||| || |||||| ||
Sbjct 483 ATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAGCAAAGA 424
Query 178047 CTTATCTTCGCCGGAAA 178063
| |||| || || ||
Sbjct 423 TTAGTCTTTGCAGGTAA 407
>seq4763
Length=1852
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| |||||||| | || |||||||| ||||| | ||||| || || |||
Sbjct 1758 CAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCGGAC 1699
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| ||| || ||||| ||||||||||| || || || || ||||||
Sbjct 1698 ACGATTGAAAACGTGAAAAGTAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAGCAA 1639
Query 178044 CGACTTATCTTCGCCGGAAA 178063
||| | || || || || ||
Sbjct 1638 CGATTGATATTTGCTGGTAA 1619
>seq3435
Length=827
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| | || |||||||| ||||| | ||||| || ||||||
Sbjct 582 CAGATTTTCGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCAGAC 523
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || ||||| || || ||||| || || || || ||||||
Sbjct 522 ACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGCAA 463
Query 178044 CGACTTATCTTCGCCGG 178060
||| | || || || ||
Sbjct 462 CGATTGATATTTGCTGG 446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203625353282422
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |