Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq52 93.3 9e-14 >seq52 Length=254519 Score = 93.3 bits (102), Expect = 9e-14 Identities = 222/333 (67%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 || || || || |||||||| || ||| | || || | || | | ||||| || Sbjct 179440 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGG 179381 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||||| ||| ||| ||||||||||| || ||| ||| ||||||| || | Sbjct 179380 CCAATCGGCAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 179321 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || || | | || || || || ||||| || || ||||| ||||| ||||| Sbjct 179320 ATGGTGCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCA 179261 Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACT 281981 | ||| || |||||||| ||| | | |||||| |||||| | | || ||| Sbjct 179260 GCAAGCTGAGCGACCTTCACTTCTCGTTTATCGTTGCGCTTGAAACAAGTAAACAAAACT 179201 Query 281982 TTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-CATA 282040 || ||||| |||||| || |||||||| | || |||||||| || || | ||| Sbjct 179200 TTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCCATG 179141 Query 282041 CCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073 || ||||||||| | || ||||| ||||| Sbjct 179140 TTGC-TGAACAAAATCAACTCTTTGTCGATGAA 179109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057677095022570