Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq53 120 4e-22 >seq53 Length=248793 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 ||||| ||||| |||||||| | || ||||||| | | | ||||||| || | | Sbjct 134401 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGATATAAATCATTGACC 134460 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 134461 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 134520 Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883 | || ||||| |||||||||| |||||| ||||| | ||||| || | || | || Sbjct 134521 AATATCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCAGAAATTTCAGCGGCCAAATTG 134580 Query 54884 TCCAATTCTACCGTTGTTACTCCATTATA 54912 |||||||| || ||||| || || | ||| Sbjct 134581 TCCAATTCGACAGTTGTGACACCTTGATA 134609 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 131807 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 131866 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| ||||| |||| ||||| |||||||| || | ||| | ||| | || Sbjct 131867 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 131926 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || || || ||||||| || || ||| || || || |||||||| || |||||| Sbjct 131927 TCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGCTCCCCTTTCGGCAGCC 131986 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 || | ||||| ||||| | ||||||||||| Sbjct 131987 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 132020 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 132230 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 132289 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || ||||| || ||||||||||| || || |||||||||||||| ||||||| ||| || Sbjct 132290 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 132349 Query 53269 ACTATTTCTAAGACCGTA 53286 ||||| ||||| || Sbjct 132350 CGAATTTCGCAGACCATA 132367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 132493 TTGAAGAATACCTTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 132552 Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 || | || || || ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 132553 TGCCAAATCGCAGCTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 132612 Query 53476 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 53532 | |||| | | |||| || | ||||||||||| | | ||| || || || || Sbjct 132613 CAACAATCTAGCTTCTTC--GGAT-TCAAATGGATATCGCATCAAAATGAAAGCATCCGC 132669 Query 53533 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592 || ||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 132670 CAACCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGCCT---G 132726 Query 53593 AATAGGAT 53600 || ||||| Sbjct 132727 AAAAGGAT 132734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593641158144720