Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq41 129 6e-25 seq7731 102 8e-17 >seq41 Length=297594 Score = 129 bits (142), Expect = 6e-25 Identities = 255/374 (68%), Gaps = 9/374 (2%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| || || || |||| || | || ||| |||| || || | |||||| ||||| || Sbjct 63780 GGTGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCA 63721 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922 || || || || || || || || || ||||| | || ||||| ||| | || Sbjct 63720 AATTGCTATAGAAAATGTCCATTCCGAGATGTACAGCTTGTTGATTGACACCTACATCCG 63661 Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982 | ||| |||| | |||| ||||| || || || || ||||| || || | Sbjct 63660 TGATCCGGTGGAGCGTGATTTTCTGTTCAACGCAATTGAAACAATTCCGTGTGTGAAGAA 63601 Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCG----CCGGCAGAGAGGCCGCCTTCGGCGAGC 117038 || || || ||||| |||| ||||||| ||| || | ||| ||| ||| | Sbjct 63600 AAAAGCAGATTGGGCTTTGCGTTGGATCGGTGACCGCCAATCA--CCGTTTTC--CGAAC 63545 Query 117039 GCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATAT 117098 | |||| || ||||| || || || || | |||||||| ||||| ||||| | || | Sbjct 63544 GTTTGGTCGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGTCAATTT 63485 Query 117099 TTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCA 117158 | ||| | || || || ||||| |||||||| |||| |||||||||||| | ||||| Sbjct 63484 TCTGGTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCTC 63425 Query 117159 GGGACGAGGGTCTG 117172 | ||||| |||||| Sbjct 63424 GTGACGA-GGTCTG 63412 >seq7731 Length=250 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || | | Sbjct 248 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCT 189 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 188 GACACCATTGACAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 130 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | ||| ||||| |||||||| Sbjct 129 GCAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAA 70 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 69 TATCCAGAAGGAGTCTACCCTTCACCTTGT 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515149394238640