Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq389 96.9 5e-15 seq308 96.9 5e-15 seq51 96.9 5e-15 seq104 91.5 2e-13 seq3104 87.8 3e-12 seq1633 87.8 3e-12 >seq389 Length=4972 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || ||| | || | ||| || Sbjct 4046 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATC 3987 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 3986 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 3927 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 |||| | | || ||||| || | |||||| Sbjct 3926 ACAACGTTTGATATTTGCCGGTATGCAATTA 3896 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || ||| | || | ||| || Sbjct 4900 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 4841 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || ||||||||||||||||| || || ||||| |||||| Sbjct 4840 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 4781 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 4780 CAACGTCTCATTTTTGCTGG 4761 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || ||| | || | ||| || Sbjct 3762 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 3703 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 3702 TGACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 3643 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 3642 GCAACGTTTGATATTTGCTGG 3622 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || ||| | || | ||| || Sbjct 4334 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 4275 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 4274 AGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 4215 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 4214 GCAACGTTTGATATTTGCTGG 4194 >seq308 Length=9352 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || ||| | || | ||| || Sbjct 338 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 279 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 278 CGACACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 219 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 |||| | | || ||||| || || |||||| Sbjct 218 ACAACGTTTGATATTTGCCGGTAAGCAATTA 188 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | ||||| ||||| || || |||| |||| | Sbjct 968 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 909 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || ||||| || |||||||| |||||||| || || || |||||| Sbjct 908 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 849 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 848 CAGCGGCTTATTTTTGCTGG 829 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124669 TTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAG 124728 ||||| |||||||||||| || ||| |||||||||| ||||||||||||||| |||| Sbjct 148 TTTTTAAAGGAAAACAATTGGAAGATGGTCGAACATTGTCAGATTATAATATTCAGAAAG 89 Query 124729 AATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||||||| | ||| | || ||||| || ||| || Sbjct 88 AAAGTACGCTGCATTTGGTGCTTCGTCTTCGGGGTGGCATGCAAATTT 41 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || || || || ||||| || ||| | || | ||| | Sbjct 1310 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 1251 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| |||||||| |||||||| || || ||||| ||||| Sbjct 1250 AGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGGATTCCACCCGATCA 1191 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 ||| | || ||||||||||| || Sbjct 1190 ACAGCGTCTCATTTTTGCAGGTAA 1167 >seq51 Length=255661 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || ||| | || | ||| || Sbjct 927 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCATC 986 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 987 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 1046 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 |||| | | || ||||| || | |||||| Sbjct 1047 ACAACGTTTGATATTTGCCGGTATGCAATTA 1077 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || ||| | || | ||| || Sbjct 73 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 132 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || ||||||||||||||||| || || ||||| |||||| Sbjct 133 GACACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 192 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 193 CAACGTCTCATTTTTGCTGG 212 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || ||| | || | ||| || Sbjct 639 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 698 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 699 AGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 758 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 759 GCAACGTTTGATATTTGCTGG 779 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || ||| | || | ||| || Sbjct 1211 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATC 1270 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 1271 TGACACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 1330 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 1331 GCAACGTTTGATATTTGCTGG 1351 >seq104 Length=152162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | ||||| ||||| || || | || |||| || Sbjct 4770 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 4711 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || ||||| || |||||||| |||||||| || || || |||||| Sbjct 4710 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 4651 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 4650 CAGCGGCTTATTTTTGCTGG 4631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| || || || ||||||||||| |||| ||||| || Sbjct 21473 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 21414 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 21413 GACACCATTGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 21354 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||||| | || |||||||| || Sbjct 21353 CAAAGATTAATCTTTGCAGGTAA 21331 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || ||| | || | ||| | Sbjct 4143 AATGCAAATTTTCGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTCGAACCCTC 4084 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| Sbjct 4083 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 4024 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 4023 GCAACGTTTGATATTTGCTGG 4003 >seq3104 Length=412 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| | ||||| || || |||||||| || ||| | || | ||| || Sbjct 345 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 286 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||| || |||||||| || || ||||| ||||| Sbjct 285 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 226 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 || | | |||||||| || Sbjct 225 GCAGCGTTTGATTTTTGCCGG 205 >seq1633 Length=565 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| | ||||| || || |||||||| || ||| | || | ||| || Sbjct 221 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 280 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||| || |||||||| || || ||||| ||||| Sbjct 281 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 340 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 || | | |||||||| || Sbjct 341 GCAGCGTTTGATTTTTGCCGG 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755353645155200