Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7731 98.7 9e-16 seq104 82.4 7e-11 >seq7731 Length=250 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || || ||||| || || || ||| |||||||||||| || || Sbjct 52 GTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCGAGCTGCTTGCCG 111 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || || || || ||||||||||| || || || Sbjct 112 GCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTAGCCTTG 171 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | |||||| ||||| | ||| | || || || || || || Sbjct 172 ACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTC 231 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 232 TTGACAAAGATCTGCAT 248 >seq104 Length=152162 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| ||||||||||||||||| || || ||||| || || |||||| Sbjct 4969 TTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 5028 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | ||| | ||||| | | || || || | || | ||||| || || Sbjct 5029 CCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 5088 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| |||||||| Sbjct 5089 AGAGTTTTCACAAATATCTGCAT 5111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433773090868588