Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq90 96.9 6e-15 >seq90 Length=164044 Score = 96.9 bits (106), Expect = 6e-15 Identities = 239/361 (66%), Gaps = 5/361 (1%) Strand=Plus/Minus Query 135575 AAACTATAGGTATTCCTATTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTAC 135634 ||| ||| || ||| ||| | | |||| ||||| |||| | |||||| || Sbjct 87188 AAATTATCCGTCTTCGTAT--ACAGAGATGCTGACGAATGGATGGCTTGGAAACAACGTG 87131 Query 135635 CCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCT 135694 |||||| || | || || |||| || ||||||| ||| |||| | || ||||| | Sbjct 87130 GTGATCCTATTCTTCACGTACAACTAAGACGATGGGCAGATATTTTGGTGATTGCGCCAT 87071 Query 135695 TAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTA 135754 | |||||| || | || ||||| | ||||| || || ||||||||| | || | Sbjct 87070 TGGACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTATTAACAAGTG 87011 Query 135755 TTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTA 135814 | || ||||| |||||| || || || | | ||||| ||||||||||| | Sbjct 87010 TGGTTAGAGCTTGGGATTGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACA 86951 Query 135815 TGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATATATG---GGTTTCA 135871 |||||||||| || || || | | || || || | | | ||| || || || |||| Sbjct 86950 TGTGGGAACACCCGATAACGTATGACCAGATGGACAAGCTGAAAAATTTGTTTGGATTCA 86891 Query 135872 TAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGG 135931 |||| | ||||| || || || || || || ||| || |||||||||||| Sbjct 86890 AAGAAGTTCCTTGCATCGAGAAGGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGG 86831 Query 135932 C 135932 | Sbjct 86830 C 86830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923071718373560