Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq36 116 4e-21 seq1 116 4e-21 seq7 107 2e-18 seq8 104 3e-17 >seq36 Length=318066 Score = 116 bits (128), Expect = 4e-21 Identities = 91/104 (88%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 60039 AACAAAT-TAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCC 60097 ||||||| ||| |||| |||||||| |||| |||| ||||||||||||| |||| ||| Sbjct 273051 AACAAATATAA--TTTA-GAAAAATTC-CTCCCCGGCCGGGAATCGAACCCGGGTCGCCC 272996 Query 60098 GCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGA 60141 ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 272995 GCGTGACAGGCGGGAATACTCACCACTATACTACCGAGGACTGA 272952 >seq1 Length=1221358 Score = 116 bits (128), Expect = 4e-21 Identities = 75/82 (91%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| |||||| |||| ||||||||||||| |||| |||||||||||||||| ||| Sbjct 828083 GAAAAATGTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATA 828142 Query 60116 CTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||| Sbjct 828143 CTCACCACTATACTACCGAGGA 828164 >seq7 Length=621157 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||| Sbjct 23054 ATATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCAC 23113 Query 60121 CACTATACTACCGAGGA 60137 ||||||||||||||||| Sbjct 23114 CACTATACTACCGAGGA 23130 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||| Sbjct 71800 ATATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCAC 71859 Query 60121 CACTATACTACCGAGGA 60137 ||||||||||||||||| Sbjct 71860 CACTATACTACCGAGGA 71876 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 22360 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 22419 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 22420 TACTACCGAGGAT 22432 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 71106 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71165 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 71166 TACTACCGAGGAT 71178 >seq8 Length=570214 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 525728 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 525787 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 525788 TACTACCGAGGA 525799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571740125862920