Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq53 145 7e-30 seq41 140 3e-28 seq389 82.4 7e-11 seq51 82.4 7e-11 >seq53 Length=248793 Score = 145 bits (160), Expect = 7e-30 Identities = 247/358 (69%), Gaps = 10/358 (3%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 |||||||| || || || || || | | ||||| ||||| | | ||| ||||| || Sbjct 131807 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 131866 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || |||||||| ||||||| |||| ||||| |||||||||||||| |||| | ||| Sbjct 131867 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 131926 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | |||| | ||| |||||||| || || ||||| ||||| | ||||| ||| Sbjct 131927 TCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGCTCCCCTTTCGGCAGCC 131986 Query 22286 ATATTTATCAATGTACGCAT-----CGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 || | ||| |||||| || |||||||| || |||||||||| || | | Sbjct 131987 ATGTCTAT-----GACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTA 132041 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 |||| |||||| ||||||||| || | || || || ||| ||||| ||||| Sbjct 132042 TCTCAGCCGGTATTGATTCGATCGATTGAATAGAACCTTTGTTGGCGATGATTTCATTTT 132101 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 | | || || | ||| | ||| | || ||||||||| | || |||| | || || Sbjct 132102 TGAGCGATTCATCCCAAAGACCCAATTCGACCAAATCTTTCATCAAATGATGATTGAC 132159 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||| |||| || ||||| |||||||| || || || |||| || | ||| | Sbjct 133364 TTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGGGCATAAAACAAATCTCTGGCTCT 133423 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || |||| |||||||||||| || | ||| || || | ||| || ||||| Sbjct 133424 GTTTTCTTCGATGCCCGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 133483 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | ||||| |||||||| || ||||||| Sbjct 133484 AGGTTCCAAATAAACCGCAAACGCCCCAGGTCTCT 133518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | ||||| | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 133756 GCTCGAATGCAATGAACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 133815 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 | ||| | |||||||| ||||| ||||||||||| ||| ||| || || ||||| Sbjct 133816 TCTTTTAATGTGTCGTATATGCCTTCGATGCTGTCTGATTTCATCGTGATCAGAAAACA 133874 >seq41 Length=297594 Score = 140 bits (154), Expect = 3e-28 Identities = 256/370 (69%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||| ||||||| |||||| | |||||||| || || | | ||| || || || || Sbjct 63780 GGTGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCA 63721 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | || || ||||| || ||||| || ||||| | | || || || ||| | Sbjct 63720 AATTGCTATAGAAAATGTCCATTCCGAGATGTACAGCTTGTTGATTGACACCTACATCCG 63661 Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCCGCGATCG 57912 || | ||| ||| || ||||||||||| || |||||||| || | Sbjct 63660 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCAATTGAAACAATTCCGTGTGTGA 63605 Query 57913 CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAG 57971 || || ||||| ||| | | ||||| | ||||| | |||| |||| Sbjct 63604 AGAAAAAAGCAGATTGGGCTTTGCGTTGGATCGGTGACCGCCAATCAC-CGTTTTCCGAA 63546 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 | | |||||||||| || || |||||||| |||||||| |||||||| ||| |||| Sbjct 63545 CGTTTGGTCGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGTCAATT 63486 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||| |||| || || |||||||||||||| |||| || |||||||||||||| || Sbjct 63485 TTCTGGTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCT 63426 Query 58092 CGCGACGAGG 58101 || ||||||| Sbjct 63425 CGTGACGAGG 63416 >seq389 Length=4972 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||| ||||| | || || ||||| || Sbjct 4333 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCA 4274 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| || || ||||| | || || || ||| Sbjct 4273 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 4214 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | ||||| ||||| Sbjct 4213 CAACGTTTGATATTTGCTGG 4194 >seq51 Length=255661 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||| ||||| | || || ||||| || Sbjct 640 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCA 699 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| || || ||||| | || || || ||| Sbjct 700 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 759 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | ||||| ||||| Sbjct 760 CAACGTTTGATATTTGCTGG 779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445706004224880