Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq145 96.9 7e-15 >seq145 Length=107730 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || ||||||||||| || |||||||| ||||||||||| || | || | || ||| Sbjct 34592 TTTTGGAGAGGAGTGGTTGAAGAACTGCTTTGGTTCATCAGTGGAAGCACGAATGCGAAA 34651 Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368 | | | ||||||| | |||||||| | | ||| || | ||||| |||||| Sbjct 34652 CAGCTTTCAGAGAAGAATGTTAACATCTGGGATGGAAATTCTTCCAGAGAATTCTTGGAC 34711 Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428 |||||||| || ||| || | ||| || || ||||| || || || || || |||||| Sbjct 34712 AGTAGAGGATTGTACAATTATGAAGAAGGTGACTTGGGGCCTGTTTATGGTTTTCAATGG 34771 Query 35429 CGTCATTTTGG 35439 || || ||||| Sbjct 34772 CGCCACTTTGG 34782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989446571831245