Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq53 107 2e-18 >seq53 Length=248793 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 131807 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 131866 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| |||| ||||| |||||||| ||| | ||| | ||| | || Sbjct 131867 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 131926 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || || || ||||||| || || ||| || || || |||||||| || |||||| Sbjct 131927 TCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGCTCCCCTTTCGGCAGCC 131986 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250 || | ||||| ||||| | ||||||||||| Sbjct 131987 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 132020 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 |||||| |||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 132230 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 132289 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| || ||||||||||| || || |||||||||||||| ||||||| ||| || Sbjct 132290 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 132349 Query 62507 ACTATTTCTAAGACCGTA 62524 ||||| ||||| || Sbjct 132350 CGAATTTCGCAGACCATA 132367 Score = 96.9 bits (106), Expect = 4e-15 Identities = 175/251 (70%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 62591 ATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650 |||||| |||||||| ||||| || || ||| ||| || || ||||| || || Sbjct 132490 ATATTGAAGAATACCTTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTG 132549 Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710 | || | | || || ||||| ||| | ||||| ||||||||||| || ||||| Sbjct 132550 TTTTGCCAAATCGCAGCTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTT 132609 Query 62711 ATTTAG--ATCTTG-TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 62767 ||| | |||| | | |||| || | ||||||||||| | | ||| || || || Sbjct 132610 ATTCAACAATCTAGCTTCTTC--GGAT-TCAAATGGATATCGCATCAAAATGAAAGCATC 132666 Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTC 62827 ||| || ||||| ||||||||||| || |||| ||| | || ||||| |||| || | Sbjct 132667 CGCCAACCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGCCT- 132725 Query 62828 TGGAATAGGAT 62838 ||| ||||| Sbjct 132726 --GAAAAGGAT 132734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629732267587920