Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq53 138 1e-27 >seq53 Length=248793 Score = 138 bits (152), Expect = 1e-27 Identities = 184/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 37302 CCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTA 37359 ||||||||| ||||| || || | | || |||||| |||||||| |||||||||||| Sbjct 132451 CCAATCCCACAAATCCGTAGGCTGAACATT--CCACATGTCATATTGAAGAATACCTTTA 132508 Query 37360 CTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTA 37419 || ||||| || | | ||| ||||| || || || | ||| || | ||||| || Sbjct 132509 CTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGCTG 132568 Query 37420 GATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCT 37479 ||||| || |||||||| || ||||| ||||||| |||| || | | | |||||| Sbjct 132569 CTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTCT 132628 Query 37480 TCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATA 37539 ||| || |||| ||| | || || || || |||| ||||| || || ||||| ||| Sbjct 132629 TCGGATTCAAATGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCACACCAATA 132688 Query 37540 CCTATGGGTCTATG 37553 || || |||| ||| Sbjct 132689 CCAATTGGTCGATG 132702 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 37930 TATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACAC 37989 |||||||| | ||| |||| ||||| | ||| |||||||||||||| || ||| Sbjct 133281 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCAC 133340 Query 37990 ATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAAT 38049 || || ||||| ||| | || ||| | ||| | ||| |||| |||||||| ||| | Sbjct 133341 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGG 133400 Query 38050 GCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGA 38109 ||| ||| |||||| ||| ||| | ||||||| | || |||||| | | ||| Sbjct 133401 GCATAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCCGTGTTCTTTTTCGCGTCAAGA 133460 Query 38110 AAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 ||||| ||||| || |||||||| ||||| | ||||| || | || || ||||| Sbjct 133461 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCCAGGTCT 133516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| |||| | ||||| || ||||||| ||| ||||| |||||| Sbjct 131810 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 131869 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || |||| ||||| |||||||| |||| ||| || || | || | | Sbjct 131870 TTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGCTCA 131929 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | || | || ||| || || ||| || ||||| || || || ||||| ||||| Sbjct 131930 GCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGCTCCCCTTTCGGCAGCCATG 131989 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 |||| | |||||||| || || ||||||||||| || || Sbjct 131990 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 132030 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 ||| ||||| ||||| ||| ||| ||||| | || |||| |||||| || || |||| Sbjct 133776 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTTAATGTGTCGTATAT 133835 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411 ||||| || ||||| || || | | | ||||||||| || ||| || || Sbjct 133836 GCCTTCGATGCTGTCTGATTTCATCGTGATCAGAAAACAACTGCTCAATTGTGGTC-TGC 133894 Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470 | || ||||| || || | ||||| || || ||| ||||||||||||| |||| ||| Sbjct 133895 ATGTACCGGCATTGAACAGCGTAGGTGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 133954 Query 38471 TATATGT 38477 |||| || Sbjct 133955 TATAAGT 133961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468461320746160