Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq41 107 2e-18 seq104 87.8 2e-12 seq53 82.4 8e-11 >seq41 Length=297594 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| |||| | ||||||||||| ||||| | |||||||| ||| |||| Sbjct 63634 TCAACGCAATTGAAACAATTCCGTGTGTGAAGAAAAAAGCAGATTGGGCTTTGCGTTGGA 63575 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 ||| || | || | | ||| |||||||| |||||||||| || || |||||| Sbjct 63574 TCGGTGACCGCCAATCACCGTTTTCCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGTA 63515 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711 | || ||||| || || || ||| |||| || | | |||| ||| | ||||||| Sbjct 63514 TTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCCG 63455 Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748 | | || || |||||||||||||| || || ||||| Sbjct 63454 GTTTGACCTTCAGCAACGAGTTGATCTCTCGTGACGA 63418 >seq104 Length=152162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| |||||||||| ||||||||||| || || || ||||| || ||||| Sbjct 4969 TTACCAGCAAAGATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 5028 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | |||||| | ||| ||||| || | || | || || || || Sbjct 5029 CCTTTTACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 5088 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| ||||| Sbjct 5089 AGAGTTTTCACAAATATCTGCAT 5111 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| | |||| |||||||||||| || || || |||||||| || ||||| Sbjct 4001 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 4060 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||||| | || | |||||||| ||| || || || | || | || |||||||| | Sbjct 4061 CTTTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGA 4120 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 || || ||||| |||||||| Sbjct 4121 GGGTCTTAACGAAAATTTGCAT 4142 >seq53 Length=248793 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 152760 AAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATC 152819 ||||||||||| || || || || || | | ||||||||| | |||| ||||| || Sbjct 131852 AAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAAT 131911 Query 152820 TTAGCCAAAGTAGGG-TCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGC 152878 |||| || ||| ||| || || |||| | || ||||| || ||| |||||||| || Sbjct 131912 TTAG-CATAGTTGGGCTCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGC 131970 Query 152879 GCCTCTATCTGCTGCCATGTCGATCATGAATTTT 152912 || || || || |||||||| || | | ||||| Sbjct 131971 TCCCCTTTCGGCAGCCATGTCTATGACGCATTTT 132004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495996789528800