Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq53 131 2e-25 >seq53 Length=248793 Score = 131 bits (144), Expect = 2e-25 Identities = 207/294 (70%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 79219 GATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCG 79278 |||||||||||||| | ||| | || ||||||||| | |||||||| |||||||| Sbjct 132446 GATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCT 132505 Query 79279 TTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAA 79338 |||||||| ||| ||| || || || || || || || || || || || || Sbjct 132506 TTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAG 132565 Query 79339 CTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA--GATCTTGTG 79396 || ||||| || | ||||| |||||||| ||||| |||||||| | |||| | Sbjct 132566 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCT--AG 132623 Query 79397 CTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 79456 ||||| | ||||||||||| | | ||| || || || || || ||||| |||| Sbjct 132624 CTTCTTCGGATTCAAATGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCACAC 132683 Query 79457 CAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 79510 ||||||| || |||| ||| | || ||||| |||| || | ||| ||||| Sbjct 132684 CAATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGCCT---GAAAAGGAT 132734 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 131807 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 131866 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| |||| |||||||||||||| ||| | ||| | ||| | || Sbjct 131867 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 131926 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || || || ||||||| || || ||| || || || |||||||| || |||||| Sbjct 131927 TCAGCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGCTCCCCTTTCGGCAGCC 131986 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 78922 || | ||||| ||||| | ||||||||||| Sbjct 131987 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 132020 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||||||||||||||| || | || | ||||| || | ||| || || | ||| || Sbjct 132230 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 132289 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 |||||||| || ||||||||||| || || ||||| || ||||| ||||||| ||| || Sbjct 132290 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 132349 Query 79179 ACTATTTCTAAGACCGTA 79196 ||||| ||||| || Sbjct 132350 CGAATTTCGCAGACCATA 132367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718171483555960